Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor and Francis Ltd.
2023
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| Online Access: | http://eprints.utm.my/105851/1/FaezahMohdSalleh2023_CharacterizationoftheNearlyCompleteMitochondrial.pdf |
| _version_ | 1811132215795384320 |
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| author | Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah |
| author_facet | Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah |
| author_sort | Miga, Marylin |
| collection | ePrints |
| description | In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome length of 15,545bp. All protein-coding genes were initiated by the typical ATN codon except nad3 and nad1, which utilizes the TTG codon. Four protein-coding genes (cox1, cox2, cox3 and nad5) are terminated by an incomplete stop codon T, while others end with either a TAA or TAG codon. The intergenic spacer region, S5, is absent in this mitogenome, supporting the lack of this region as a specific character in damselflies. Phylogenetic analysis showed that the newly sequenced E. ochracea is phylogenetically closer to E. ornata with a high support value. |
| first_indexed | 2024-09-23T23:59:50Z |
| format | Article |
| id | utm.eprints-105851 |
| institution | Universiti Teknologi Malaysia - ePrints |
| language | English |
| last_indexed | 2024-09-23T23:59:50Z |
| publishDate | 2023 |
| publisher | Taylor and Francis Ltd. |
| record_format | dspace |
| spelling | utm.eprints-1058512024-05-20T07:12:15Z http://eprints.utm.my/105851/ Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah Q Science (General) In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome length of 15,545bp. All protein-coding genes were initiated by the typical ATN codon except nad3 and nad1, which utilizes the TTG codon. Four protein-coding genes (cox1, cox2, cox3 and nad5) are terminated by an incomplete stop codon T, while others end with either a TAA or TAG codon. The intergenic spacer region, S5, is absent in this mitogenome, supporting the lack of this region as a specific character in damselflies. Phylogenetic analysis showed that the newly sequenced E. ochracea is phylogenetically closer to E. ornata with a high support value. Taylor and Francis Ltd. 2023 Article PeerReviewed application/pdf en http://eprints.utm.my/105851/1/FaezahMohdSalleh2023_CharacterizationoftheNearlyCompleteMitochondrial.pdf Miga, Marylin and Jahari, Puteri Nur Syahzanani and Parimannan, Sivachandran and Rajandas, Heera and Latiff, Muhammad Abu Bakar and Yap, Jing Wei and Shamsir, Mohd. Shahir and Mohd. Salleh, Faezah (2023) Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis. Mitochondrial DNA Part B: Resources, 8 (2). pp. 292-296. ISSN 2380-2359 (In Press) http://dx.doi.org/10.1080/23802359.2023.2179355 DOI:10.1080/23802359.2023.2179355 |
| spellingShingle | Q Science (General) Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_full | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_fullStr | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_full_unstemmed | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_short | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_sort | characterization of the nearly complete mitochondrial genome of ochraceous darkies euphaea ochracea selys 1859 odonata zygoptera euphaeidae and phylogenetic analysis |
| topic | Q Science (General) |
| url | http://eprints.utm.my/105851/1/FaezahMohdSalleh2023_CharacterizationoftheNearlyCompleteMitochondrial.pdf |
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