Comparison of domain and hydrophobicity features for the prediction of protein-protein interactions using support vector machines

Comparison of domain and hydrophobicity features for the prediction of protein-protein interactions using support vector machines

The protein domain structure has been widely used as the most informative sequence feature to computationally predict protein-protein interactions. However, in a recent study, a research group has reported a very high accuracy of 94% using hydrophobicity feature. Therefore, in this study we compare...

Podrobná bibliografie
Hlavní autoři:	Alashwal, Hany, Deris, Safaai, M. Othman, Razib
Médium:	Článek
Jazyk:	English
Vydáno:	World Academy of Science, Engineering and Technology 2007
Témata:	Q Science (General) QA75 Electronic computers. Computer science
On-line přístup:	http://eprints.utm.my/8419/1/HAlashwal2007-Comparison_of_Domain_and_Hydrophobicity.pdf

Podobné jednotky

Predicting protein-protein interactions as a one-class classification problem
Autor: Alashwal, Hany, a další
Vydáno: (2006)

One-class support vector machines for protein-protein interactions prediction
Autor: Alashwal, H., a další
Vydáno: (2006)

Support vector machines for predicting protein-protein interactions using domains and hydrophobicity features
Autor: Alashwal, Hany Taher Ahmed, a další
Vydáno: (2006)

The development of machine learning based software for predicting protein-protein interactions and protein function from protein primary structure
Autor: Othman, Muhamad Razib, a další
Vydáno: (2007)

Support vector machines for predicting protein-protein interactions using domains and hydrophobicity features /
Autor: Hany Alashwal, author, a další
Vydáno: (2006)

UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
Autor: Deris, Safaai, a další
Vydáno: (2006)

Incorporating semantic similarity measure in genetic algorithm: an approach for searching the gene ontology terms
Autor: M. Othman, Razib, a další
Vydáno: (2007)

Predicting proteins interactions from protein sequence features using support vector machines
Autor: Alashwal, Hany Taher Ahmed, a další
Vydáno: (2017)

Utilizing shared interacting domain patterns and gene ontology information to improve protein–protein interaction prediction
Autor: Roslan, Rosfuzah, a další
Vydáno: (2010)

Genetic algorithms for gene ontology - based protein sequence annotation
Autor: Othman, Muhamad Razib
Vydáno: (2007)

Biological-based semi-supervised clustering algorithm to improve gene function prediction
Autor: Kasim, Shahreen, a další
Vydáno: (2011)

The development of semantic meta-database: an ontology based semantic integration of biological databases
Autor: Samsudin, Ruhaidah, a další
Vydáno: (2007)

Protein secondary structure prediction from amino acid sequence using artificial intelligence technique
Autor: Deris, Safaai, a další
Vydáno: (2005)

Engineering JADEX agents with the MaSE methodology
Autor: Mohamad, Radziah, a další
Vydáno: (2006)

MaSE2Jadex : a roadmap to engineer JADEX agents from mase methodology
Autor: Mohamed, Radziah, a další
Vydáno: (2006)

Pattern-oriented design for multi-agent system: a conceptual model
Autor: Mohamad, Radziah, a další
Vydáno: (2007)

The hybrid feature selection technique using term frequency-inverse document frequency and support vector machine-recursive feature elimination for sentiment classification
Autor: Nur Syafiqah, Mohd Nafis
Vydáno: (2022)

Protein - protein interactions prediction using support vector machines /
Autor: 350965 Hany Taher Ahmed Alashwal, a další
Vydáno: (2007)

Web-based support system for flood response operation in Malaysia
Autor: Katuk, Norliza, a další
Vydáno: (2009)

Waste classification using support vector machine with SIFT-PCA feature extraction
Autor: Puspaningrum, Adita Putri, a další
Vydáno: (2020)

Web-based support system for flood response operation in Malaysia
Autor: Katuk, Norliza, a další
Vydáno: (2009)

Operation sequencing using modified particle swarm optimization
Autor: Zakaria, Zalmiyah, a další
Vydáno: (2007)

Towards implementing reactive scheduling for job shop problem
Autor: Zakaria, Zalmiyah, a další
Vydáno: (2006)

Towards gene network estimation with structure learning
Autor: Zainudin, Suhaila, a další
Vydáno: (2006)

Improved hybrid teaching learning based optimization-jaya and support vector machine for intrusion detection systems
Autor: Mohammad Khamees Khaleel, Alsajri
Vydáno: (2022)

Protein - protein interactions prediction using support vector machines [compact disc] /
Autor: 350965 Hany Taher Ahmed Alashwal, a další
Vydáno: (2007)

A hybrid bio-inspired and musical-harmony approach for machine loading optimization in flexible manufacturing system
Autor: Yusof, Umi Kalsom, a další
Vydáno: (2014)

A finite-state approach to arabic broken noun morphology
Autor: Alajmi, Naser, a další
Vydáno: (2006)

Online handwriting recognition using support vector machine
Autor: Ahmad, Abdul Rahim, a další
Vydáno: (2004)

Information hiding in multimedia files : a literature review
Autor: Ali Ja’far, Abdullah Mohammed Abdo, a další
Vydáno: (2006)

Intelligent classification algorithms in enhancing the performance of support vector machine
Autor: Alwan, Hiba Basim, a další
Vydáno: (2019)

Recognition decision-making model using temporal data mining technique
Autor: Md Norwawi, Norita, a další
Vydáno: (2005)

Selecting informative genes from leukemia gene expression data using a hybrid approach for cancer classification
Autor: Mohamad, Mohd. Saberi, a další
Vydáno: (2007)

An experimental design method for evaluating usability factors of the rechap process model
Autor: Ibrahim, Noraini, a další
Vydáno: (2011)

Finding kernel function for stock market prediction with support vector regression
Autor: Chai, Chon Lung
Vydáno: (2006)

An Improved Ant Colony Optimization Algorithm for Clustering Proteins in Protein Interaction Network
Autor: Jamaludin, Sallim, a další
Vydáno: (2009)

Email categorization using support vector machine
Autor: Mohd. Daud, Mariah
Vydáno: (2004)

Stego keys performance on feature based coding method in text domain
Autor: Din, Roshidi, a další
Vydáno: (2017)

A generative reuse approach for component- based software engineering of embedded real-time system
Autor: Abang Jawawi, Dayang Norhayati, a další
Vydáno: (2007)

Arabic language script and encoding identification with support vector machines and rough set theory
Autor: Mohamed Sidya, Mohamed Ould
Vydáno: (2007)