UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
Gene Ontology terms have been actively used to annotate various protein sets. SWISS-PROT, TrEMBL, and InterPro are protein databases that are annotated according to the Gene Ontology terms. However, direct implementation of the Gene Ontology terms for annotation of anonymous protein sequences is not...
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| Format: | Article |
| Language: | English |
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World Academy of Science, Engineering and Technology
2006
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| Online Access: | http://eprints.utm.my/8452/1/8452.pdf |
| _version_ | 1796854386646843392 |
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| author | Deris, Safaai Alashwal, H. Othman, M. R. |
| author_facet | Deris, Safaai Alashwal, H. Othman, M. R. |
| author_sort | Deris, Safaai |
| collection | ePrints |
| description | Gene Ontology terms have been actively used to annotate various protein sets. SWISS-PROT, TrEMBL, and InterPro are protein databases that are annotated according to the Gene Ontology terms. However, direct implementation of the Gene Ontology terms for annotation of anonymous protein sequences is not easy, especially for species not commonly represented in biological databases. UTMGO is developed as a tool that allows the user to quickly and easily search for a group of
semantically related Gene Ontology terms. The applicability of the UTMGO is demonstrated by applying it to annotation of anonymous protein sequence. The extended UTMGO uses the Gene
Ontology terms together with protein sequences associated with the terms to perform the annotation task. GOPET, GOtcha, GoFigure, and JAFA are used to compare the performance of the extended UTMGO. |
| first_indexed | 2024-03-05T18:13:32Z |
| format | Article |
| id | utm.eprints-8452 |
| institution | Universiti Teknologi Malaysia - ePrints |
| language | English |
| last_indexed | 2024-03-05T18:13:32Z |
| publishDate | 2006 |
| publisher | World Academy of Science, Engineering and Technology |
| record_format | dspace |
| spelling | utm.eprints-84522010-06-02T01:55:19Z http://eprints.utm.my/8452/ UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence Deris, Safaai Alashwal, H. Othman, M. R. QA75 Electronic computers. Computer science Gene Ontology terms have been actively used to annotate various protein sets. SWISS-PROT, TrEMBL, and InterPro are protein databases that are annotated according to the Gene Ontology terms. However, direct implementation of the Gene Ontology terms for annotation of anonymous protein sequences is not easy, especially for species not commonly represented in biological databases. UTMGO is developed as a tool that allows the user to quickly and easily search for a group of semantically related Gene Ontology terms. The applicability of the UTMGO is demonstrated by applying it to annotation of anonymous protein sequence. The extended UTMGO uses the Gene Ontology terms together with protein sequences associated with the terms to perform the annotation task. GOPET, GOtcha, GoFigure, and JAFA are used to compare the performance of the extended UTMGO. World Academy of Science, Engineering and Technology 2006 Article PeerReviewed application/pdf en http://eprints.utm.my/8452/1/8452.pdf Deris, Safaai and Alashwal, H. and Othman, M. R. (2006) UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence. International Journal of Biological and Medical Sciences, 1 (2). pp. 111-119. ISSN 1307-7457 http://www.waset.org/ijbms/v1.html |
| spellingShingle | QA75 Electronic computers. Computer science Deris, Safaai Alashwal, H. Othman, M. R. UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence |
| title | UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence |
| title_full | UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence |
| title_fullStr | UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence |
| title_full_unstemmed | UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence |
| title_short | UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence |
| title_sort | utmgo a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence |
| topic | QA75 Electronic computers. Computer science |
| url | http://eprints.utm.my/8452/1/8452.pdf |
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