idopNetwork: A network tool to dissect spatial community ecology by Ang Dong, Shuang Wu, Jincan Che, Yu Wang, Rongling Wu

Subjects: “…evolutionary game theory…”
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Modeling spatial interaction networks of the gut microbiota by Xiaocang Cao, Ang Dong, Guangbo Kang, Xiaoli Wang, Liyun Duan, Huixing Hou, Tianming Zhao, Shuang Wu, Xinjuan Liu, He Huang, Rongling Wu

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A Single-Cell Omics Network Model of Cell Crosstalk during the Formation of Primordial Follicles by Qian Wang, Ang Dong, Libo Jiang, Christopher Griffin, Rongling Wu

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A Multilayer Interactome Network Constructed in a Forest Poplar Population Mediates the Pleiotropic Control of Complex Traits by Huiying Gong, Sheng Zhu, Xuli Zhu, Qing Fang, Xiao-Yu Zhang, Rongling Wu, Rongling Wu

“…Here, we develop a coupled regulatory interaction differential equation to assess overall and independent genetic effects on trait growth. Based on evolutionary game theory and developmental modularity theory, we constructed multilayer, omnigenic networks of bidirectional, weighted, and positive or negative epistatic interactions using a forest poplar tree mapping population, which were organized into metagalactic, intergalactic, and local interstellar networks that describe layers of structure between modules, submodules, and individual single nucleotide polymorphisms, respectively. …”
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Genetic dissection of growth trajectories in forest trees: From FunMap to FunGraph by Li Feng, Peng Jiang, Caifeng Li, Jinshuai Zhao, Ang Dong, Dengcheng Yang, Rongling Wu

“…This approach, symbolized as FunGraph, combines functional mapping, evolutionary game theory, and prey-predator theory into mathematical graphs, allowing the observed genetic effect of a locus to be decomposed into its independent component (resulting from this locus’ intrinsic capacity) and dependent component (due to extrinsic regulation by other loci). …”
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