omicsGAT: Graph Attention Network for Cancer Subtype Analyses by Sudipto Baul, Khandakar Tanvir Ahmed, Joseph Filipek, Wei Zhang

“…From the results, we can conclude that some neighbors play a more important role than others in cancer subtype analyses of a particular sample based on the attention coefficient.…”
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Independent reliability and availability analyses of modified classification for migrated lumbar disc herniation by Wenshuo Gao, Wei Zhang, Hao Pan, Dong Wang

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Subgenome-aware analyses suggest a reticulate allopolyploidization origin in three Papaver genomes by Ren-Gang Zhang, Chaoxia Lu, Guang-Yuan Li, Jie Lv, Longxin Wang, Zhao-Xuan Wang, Zhe Chen, Dan Liu, Ye Zhao, Tian-Le Shi, Wei Zhang, Zhao-Hui Tang, Jian-Feng Mao, Yong-Peng Ma, Kai-Hua Jia, Wei Zhao

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Genome-Wide Identification, Characterization, and Expression Analyses of P-Type ATPase Superfamily Genes in Soybean by Bingqian Zhao, Haicheng Wu, Wenjing Xu, Wei Zhang, Xi Chen, Yiyong Zhu, Huatao Chen, Houqing Zeng

“…Here, we performed genome-wide bioinformatic and expression analyses of the P-type ATPase superfamily genes in order to explore the potential functions of P-type ATPases in soybean. …”
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Genome-Wide Identification and Bioinformatics Analyses of Host Defense Peptides Snakin/GASA in Mangrove Plants by Chenjing Shang, Ting Ye, Qiao Zhou, Pengyu Chen, Xiangyu Li, Wenyi Li, Si Chen, Zhangli Hu, Wei Zhang

“…Collinearity and conservative motif analyses showed that the Snakin/GASA family members in <i>K. obovata</i> and <i>A. corniculatum</i> underwent multiple gene duplication events. …”
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Hydrogeochemical and Isotopic Analyses of Deep Geothermal Fluids in the Wumishan Formation in Xiong’an New Area, China by Xi Zhu, Guiling Wang, Xiuyan Wang, Shihua Qi, Feng Ma, Wei Zhang, Hanxiong Zhang

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Prognostic effect of pulmonary hypertension in patients with chronic kidney disease: Univariate and multivariate analyses of factors associated with survival by Lei Wang, Wei Zhang, Cailian Zhang, Zhe Yan, Shaomei Li, Chunxia Zhang, Yakun Chen, Qing Pan, Xuzhi Liang, Xian Chen

“…Predictor values of nomogram identified from survival analyses enabled calculation of death probabilities for CKD with PH patients. …”
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Whole-genome analyses of APEC carrying mcr-1 in some coastal areas of China from 2019 to 2020 by Zimeng Hu, Xinyi Chen, Zhuohao Wang, Genglin Guo, Zhengjun Xu, Qing'an Zhou, Xiankai Wei, Yuqing Liu, Lu Zhou, Zhongming Tan, Wei Zhang

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Multimodal Single‐Cell Analyses Outline the Immune Microenvironment and Therapeutic Effectors of Interstitial Cystitis/Bladder Pain Syndrome by Fei Su, Wei Zhang, Lingfeng Meng, Wei Zhang, Xiaodong Liu, Xiaorui Liu, Meng Chen, Yaoguang Zhang, Fei Xiao

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Integrative transcriptome and proteome analyses of clear cell renal cell carcinoma develop a prognostic classifier associated with thrombus by Xiaolei Shi, Qingyang Pang, Xinwen Nian, Aimin Jiang, Haoqing Shi, Wenqiang Liu, Xinxin Gan, Yisha Gao, Yiren Yang, Jin Ji, Xiaojie Tan, Chengwu Xiao, Wei Zhang

“…The six-gene-based prognostic classifier developed by integrative analyses may facilitate ccRCC molecular subtyping and treatment.…”
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Identification of loci governing soybean seed protein content via genome-wide association study and selective signature analyses by Hongmei Zhang, Guwen Zhang, Wei Zhang, Qiong Wang, Wenjing Xu, Wenjing Xu, Xiaoqing Liu, Xiaoyan Cui, Xin Chen, Huatao Chen

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Comprehensive analyses indicated the association between m6A related long non‐coding RNAs and various pathways in glioma by Zhuohui Chen, Wei Zhang, Zhouyi Yan, Mengqi Zhang

“…Additionally, a 15‐gene prognostic signature namely m6A‐DELPFS was constructed. Analyses of epithelial‐mesenchymal‐transition score, tumor microenvironment, immune infiltration, clinical characterization analysis, and putative drug prediction were performed to confirm the clinical utility and efficacy of m6A‐DELPFS. …”
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Genome-wide methylomic and transcriptomic analyses identify subtype-specific epigenetic signatures commonly dysregulated in glioma stem cells and glioblastoma by Rajendra P. Pangeni, Zhou Zhang, Angel A. Alvarez, Xuechao Wan, Namratha Sastry, Songjian Lu, Taiping Shi, Tianzhi Huang, Charles X. Lei, C. David James, John A. Kessler, Cameron W. Brennan, Ichiro Nakano, Xinghua Lu, Bo Hu, Wei Zhang, Shi-Yuan Cheng

“…We referenced these results with The Cancer Genome Atlas (TCGA) GBM datasets to generate methylomic and transcriptomic signatures for GSCs and GBM bulk tumors of each transcriptomically pre-defined tumor subtype. Survival analyses were carried out for these signature genes using publicly available datasets, including from TCGA. …”
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Transcriptional and biochemical analyses of Planomicrobium strain AX6 from Qinghai-Tibetan Plateau, China, reveal hydrogen peroxide scavenging potential by Ali Bahadur, Ting Li, Wasim Sajjad, Fahad Nasir, Muhammad Amir Zia, Minghui Wu, Gaosen Zhang, Guangxiu Liu, Tuo Chen, Wei Zhang

“…Besides, Kyoto Encyclopedia of Genes and Genomes pathway and Gene Ontology analyses revealed the down- and/or up-regulated pathways following H2O2 treatment. …”
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Analyses of Pepper Cinnamoyl-CoA Reductase Gene Family and Cloning of CcCCR1/2 and Their Function Identification in the Formation of Pungency by Dan Wu, Miao Ni, Xin Lei, Liping Zhang, Wei Zhang, Huangying Shu, Zhiwei Wang, Jie Zhu, Shanhan Cheng, Pingwu Liu, Honghao Lv, Limei Yang

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Identification of hub genes associated with the pathogenesis of diffuse large B-cell lymphoma subtype one characterized by host response via integrated bioinformatic analyses by Lingna Zhou, Liya Ding, Yuqi Gong, Jing Zhao, Gong Xin, Ren Zhou, Wei Zhang

Subjects: “…Integrated bioinformatic analyses…”
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Microfungi Associated with Peach Branch Diseases in China by Ying Zhou, Ishara S. Manawasinghe, Zhizheng He, Wei Zhang, Mei Liu, Jinyan Song, Shifang Li, Zaifeng Fan, Jiye Yan

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A study measuring the degree of integration between the digital economy and logistics industry in China. by Wei Zhang, Hongli Liu, Yuan Yao, Zifu Fan

“…To explore the degree of integration between the digital economy and the logistics industry, this paper uses input-output models and social network analysis to empirically analyse the level of industrial integration between the core industries of China's digital economy and the logistics industry during the period 2007-2017. …”
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Multifactor Uncertainty Analysis of Construction Risk for Deep Foundation Pits by Wei Zhang, Zhen Huang, Jiabing Zhang, Ruifu Zhang, Shaokun Ma

“…Second, the Delphi method is used to analyse the importance of each index of the evaluation object in order to obtain the evaluation data. …”
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Rationality Research on Pumping Station Location Based on MIKE Model: A Case Study of the Wanfu River Re-Navigation Project by Song Han, Xinyan Yu, Wei Zhang, Guoqing Sang, Yuyu Liu, Shiguo Xu

“…The MIKE model is executed to simulate both the impact of Guanqiao Ship Lock operation on the water quality of the pumping station intake as well as the effects of pumping station operation on the navigable water level in order to analyse and demonstrate the reasonableness of the pumping station’s location. …”
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