Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs by Rachel M. Colquhoun, Michael B. Hall, Leandro Lima, Leah W. Roberts, Kerri M. Malone, Martin Hunt, Brice Letcher, Jane Hawkey, Sophie George, Louise Pankhurst, Zamin Iqbal

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ClustAGE: a tool for clustering and distribution analysis of bacterial accessory genomic elements by Egon A. Ozer

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Development of a High Resolution Virulence Allelic Profiling (HReVAP) Approach Based on the Accessory Genome of Escherichia coli to Characterize Shiga-toxin Producing E. coli (STEC... by Valeria eMichelacci, Massimiliano eOrsini, Arnold eKnijn, Sabine eDelannoy, Patrick eFach, Alfredo eCaprioli, Stefano eMorabito

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Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum by Nitin Kumar, Ganesh Lad, Elisa Giuntini, Maria E. Kaye, Piyachat Udomwong, N. Jannah Shamsani, J. Peter W. Young, Xavier Bailly

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Within-Species Genomic Variation and Variable Patterns of Recombination in the Tetracycline Producer Streptomyces rimosus by Cooper J. Park, Cheryl P. Andam

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Comparative genome analysis of the genus Shewanella unravels the association of key genetic traits with known and potential pathogenic lineages by Gabriela N. Cerbino, German M. Traglia, Teolincacihuatl Ayala Nuñez, Gisela Parmeciano Di Noto, María Soledad Ramírez, Daniela Centrón, Andrés Iriarte, Cecilia Quiroga

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Pan-Genome of Novel <i>Pantoea stewartii</i> subsp. <i>indologenes</i> Reveals Genes Involved in Onion Pathogenicity and Evidence of Lateral Gene Transfer by Gaurav Agarwal, Ronald D. Gitaitis, Bhabesh Dutta

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Evolutionary dynamics of the accessory genomes of Staphylococcus aureus by Kathryn R. Piper, Odion O. Ikhimiukor, Stephanie S. R. Souza, Teddy Garcia-Aroca, Cheryl P. Andam

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Comparison of gene clustering criteria reveals intrinsic uncertainty in pangenome analyses by Saioa Manzano-Morales, Yang Liu, Sara González-Bodí, Jaime Huerta-Cepas, Jaime Iranzo

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The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans by Alejandro Vasquez-Rifo, Isana Veksler-Lublinsky, Zhenyu Cheng, Frederick M. Ausubel, Victor Ambros

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Pan-genome analysis of Streptococcus suis serotype 2 highlights genes associated with virulence and antibiotic resistance by You Zhou, Teng Tu, Xueping Yao, Yan Luo, Zexiao Yang, Meishen Ren, Meishen Ren, Meishen Ren, Meishen Ren, Ge Zhang, Ge Zhang, Ge Zhang, Yuanyuan Yu, Yuanyuan Yu, Yuanyuan Yu, Aiping Lu, Aiping Lu, Aiping Lu, Yin Wang

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Comparative Genomic Analysis of Clinical and Environmental Vibrio Vulnificus Isolates Revealed Biotype 3 Evolutionary Relationships by Yael eKotton, Yael eKotton, Michal eGordon, Vered eChalifa-Caspi, Naiel eBisharat, Naiel eBisharat

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Pan-genome wide association study of Glaesserella parasuis highlights genes associated with virulence and biofilm formation by You Zhou, Dike Jiang, Xueping Yao, Yan Luo, Zexiao Yang, Meishen Ren, Meishen Ren, Meishen Ren, Meishen Ren, Ge Zhang, Ge Zhang, Ge Zhang, Yuanyuan Yu, Yuanyuan Yu, Yuanyuan Yu, Aiping Lu, Aiping Lu, Aiping Lu, Yin Wang

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Multi-host infection and phylogenetically diverse lineages shape the recombination and gene pool dynamics of Staphylococcus aureus by Stephanie S. R. Souza, Joshua T. Smith, Spencer A. Bruce, Robert Gibson, Isabella W. Martin, Cheryl P. Andam

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Phylogenetic analysis and accessory genome diversity reveal insight into the evolutionary history of Streptococcus dysgalactiae by Cinthia Alves-Barroco, Cinthia Alves-Barroco, Patrícia H. Brito, Patrícia H. Brito, Patrícia H. Brito, Ilda Santos-Sanches, Alexandra R. Fernandes, Alexandra R. Fernandes

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Relevance of prokaryotic subspecies in the age of genomics by S.N. Venter, M. Palmer, E.T. Steenkamp

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Global Genomic Epidemiology of <i>Escherichia coli</i> (ExPEC) ST38 Lineage Revealed a Virulome Associated with Human Infections by Erica L. Fonseca, Sergio M. Morgado, Raquel V. Caldart, Ana Carolina Vicente

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Genomic analysis of Sinorhizobium meliloti LPU63, an acid-tolerant and symbiotically efficient alfalfa-nodulating rhizobia by Juan Hilario Cafiero, María Salvetti Casasco, Mauricio Javier Lozano, Carolina Vacca, Silvina Laura López García, Walter Omar Draghi, Antonio Lagares, María Florencia Del Papa

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The Novel Internalins InlP1 and InlP4 and the Internalin-Like Protein InlP3 Enhance the Pathogenicity of Listeria monocytogenes by Eva Harter, Caroline Lassnig, Eva Maria Wagner, Eva Maria Wagner, Andreas Zaiser, Martin Wagner, Martin Wagner, Kathrin Rychli

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Aspergillus flavus pangenome (AflaPan) uncovers novel aflatoxin and secondary metabolite associated gene clusters by Sunil S. Gangurde, Walid Korani, Prasad Bajaj, Hui Wang, Jake C. Fountain, Gaurav Agarwal, Manish K. Pandey, Hamed K. Abbas, Perng-Kuang Chang, C. Corley Holbrook, Robert C. Kemerait, Rajeev K. Varshney, Bhabesh Dutta, Josh P. Clevenger, Baozhu Guo

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