Complete genome sequence of Citrobacter werkmanii strain BF-6 isolated from industrial putrefaction by Gang Zhou, Hong Peng, Ying-si Wang, Xiao-mo Huang, Xiao-bao Xie, Qing-shan Shi

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Structural variants and tandem repeats in the founder individuals of four F2 pig crosses and implications to F2 GWAS results by Iulia Blaj, Jens Tetens, Jörn Bennewitz, Georg Thaller, Clemens Falker-Gieske

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Genomic analysis of Enterococcus faecium strain RAOG174 associated with acute chorioamnionitis carried antibiotic resistance gene: is it time for precise microbiological identifica... by Pisut Pongchaikul, Roberto Romero, Paninee Mongkolsuk, Pornpun Vivithanaporn, Thidathip Wongsurawat, Piroon Jenjaroenpun, Perapon Nitayanon, Iyarit Thaipisuttikul, Threebhorn Kamlungkuea, Arunee Singsaneh, Pitak Santanirand, Piya Chaemsaithong

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Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule by Esquerré Diane, Le Cam Aurélie, Rallière Cécile, Montfort Jerome, Rescan Pierre-Yves, Hugot Karine

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Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer <it>Sclerotium rolfsii</it> by Stahl Ulf, Funk Laura, Bekel Thomas, Müller-Hagen Dirk, Schmid Jochen, Sieber Volker, Meyer Vera

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Comparative analysis of Fusarium crown rot resistance in synthetic hexaploid wheats and their parental genotypes by Ying Chen, Yunpeng Wang, Fangnian Guan, Li Long, Yuqi Wang, Hao Li, Mei Deng, Yazhou Zhang, Zhien Pu, Wei Li, Qiantao Jiang, Jirui Wang, Yuming Wei, Jian Ma, Qiang Xu, Houyang Kang, Pengfei Qi, Zhongwei Yuan, Lianquan Zhang, Dengcai Liu, Youliang Zheng, Guoyue Chen, Yunfeng Jiang

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Analyses of Xenorhabdus griffiniae genomes reveal two distinct sub-species that display intra-species variation due to prophages by Jennifer K. Heppert, Ryan Musumba Awori, Mengyi Cao, Grischa Chen, Jemma McLeish, Heidi Goodrich-Blair

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Rootstock-regulated gene expression patterns associated with fire blight resistance in apple by Jensen Philip J, Halbrendt Noemi, Fazio Gennaro, Makalowska Izabela, Altman Naomi, Praul Craig, Maximova Siela N, Ngugi Henry K, Crassweller Robert M, Travis James W, McNellis Timothy W

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Multi-omics analyses of early liver injury reveals cell-type-specific transcriptional and epigenomic shift by Maciej Migdał, Eugeniusz Tralle, Karim Abu Nahia, Łukasz Bugajski, Katarzyna Zofia Kędzierska, Filip Garbicz, Katarzyna Piwocka, Cecilia Lanny Winata, Michał Pawlak

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Canonical and non-canonical JAK/STAT transcriptional targets may be involved in distinct and overlapping cellular processes by Amy Tsurumi, Connie Zhao, Willis X. Li

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Genomic surveillance of SARS-CoV-2 in US military compounds in Afghanistan reveals multiple introductions and outbreaks of Alpha and Delta variants by Irina Maljkovic Berry, Jun Hang, Christian Fung, Yu Yang, Marcus Chibucos, Adam Pollio, Jay Gandhi, Tao Li, Matthew A. Conte, Grace M. Lidl, Jay A. Johannigman, Heather Friberg

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Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC) by Eddy Patricia Lopez Molano, Odalys García Cabrera, Juliana Jose, Leandro Costa do Nascimento, Marcelo Falsarella Carazzolle, Paulo José Pereira Lima Teixeira, Javier Correa Alvarez, Ricardo Augusto Tiburcio, Paulo Massanari Tokimatu Filho, Gustavo Machado Alvares de Lima, Rafael Victório Carvalho Guido, Thamy Lívia Ribeiro Corrêa, Adriana Franco Paes Leme, Piotr Mieczkowski, Gonçalo Amarante Guimarães Pereira

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De novo annotation of lncRNA HOTAIR transcripts by long-read RNA capture-seq reveals a differentiation-driven isoform switch by Evdokiia Potolitsyna, Sarah Hazell Pickering, Ave Tooming-Klunderud, Philippe Collas, Nolwenn Briand

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Evolution of major milk proteins in <it>Mus musculus </it>and <it>Mus spretus </it>mouse species: a genoproteomic analysis by Panthier Jean-Jacques, Rebours Emmanuelle, Andrei Sanda, Miranda Guy, Beauvallet Christian, Bevilacqua Claudia, Boumahrou Nisrine, Bellier Sylvain, Martin Patrice

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Characterization and gene expression analysis of the <it>cir </it>multi-gene family of <it>plasmodium chabaudi chabaudi </it>(AS) by Lawton Jennifer, Brugat Thibaut, Yan Yam, Reid Adam, Böhme Ulrike, Otto Thomas, Pain Arnab, Jackson Andrew, Berriman Matthew, Cunningham Deirdre, Preiser Peter, Langhorne Jean

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Identification of condition-specific regulatory mechanisms in normal and cancerous human lung tissue by Yuqing Hang, Josh Burns, Benjamin T. Shealy, Rini Pauly, Stephen P. Ficklin, Frank A. Feltus

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Whole genome sequencing and comparative genomic analysis of oleaginous red yeast Sporobolomyces pararoseus NGR identifies candidate genes for biotechnological potential and ballist... by Chun-Ji Li, Die Zhao, Bing-Xue Li, Ning Zhang, Jian-Yu Yan, Hong-Tao Zou

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Whole-genome SNP allele frequency differences between Tibetan and Large white pigs reveal genes associated with skeletal muscle growth by Heli Xiong, Yan Zhang, Zhiyong Zhao, Qian Sha

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Identification and validation of a major QTL for kernel length in bread wheat based on two F3 biparental populations by Xinlin Xie, Shuiqin Li, Hang Liu, Qiang Xu, Huaping Tang, Yang Mu, Mei Deng, Qiantao Jiang, Guoyue Chen, Pengfei Qi, Wei Li, Zhien Pu, Ahsan Habib, Yuming Wei, Youliang Zheng, Xiujin Lan, Jian Ma

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<it>De novo</it> assembly of highly diverse viral populations by Yang Xiao, Charlebois Patrick, Gnerre Sante, Coole Matthew G, Lennon Niall J, Levin Joshua Z, Qu James, Ryan Elizabeth M, Zody Michael C, Henn Matthew R

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