Hoogsteen Base Pairings by Neelabh Datta

“… In contrast to Watson-Crick (WC) base pairing, Hoogsteen (HG) base pairing involves flipping a purine base 180° between its anti and syn conformation. …”
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DNA with Artificial Base Pairs by Jürg Hunziker, Gérald Mathis

Subjects: “…Artificial base pair…”
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Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs. by Michael F Sloma, David H Mathews

“…Non-canonical pairs can be predicted using a knowledge-based model of structure that scores nucleotide cyclic motifs, or NCMs. …”
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SS/SW BASE PAIRS ARE THE ONLY BASE PAIRS INVOLVED IN LONG-RANGE RNA TERTIARY MOTIFS by Manakov, A.K., Yakovlev, V.V., Baulin, E.F.

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DNA-Directed Base Pair Opening by Youri Timsit

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STUDIES OF THE STRUCTURE AND STABILITY OF BASE-PAIR MISMATCHES, BASE-PAIRS INVOLVING MODIFIED BASES, AND DNA-DRUG COMPLEXES by Leonard, G, Hunter, W, Brown, T

On the Significance of Lone Pair/Lone Pair and Lone Pair/Bond Pair Repulsions in the Cation Affinity and Lewis Acid/Lewis Base Interactions by Younes Valadbeigi, Jean-François Gal

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Base-pair ambiguity and the kinetics of RNA folding by Guangyao Zhou, Jackson Loper, Stuart Geman

“…Abstract Background A folding RNA molecule encounters multiple opportunities to form non-native yet energetically favorable pairings of nucleotide sequences. Given this forbidding free-energy landscape, mechanisms have evolved that contribute to a directed and efficient folding process, including catalytic proteins and error-detecting chaperones. …”
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Hydrogen Bonding (Base Pairing) in Antiviral Activity by Erik De Clercq

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Constraint of Base Pairing on HDV Genome Evolution by Saki Nagata, Ryoji Kiyohara, Hiroyuki Toh

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Defining genome architecture at base-pair resolution by Hua, P, Badat, M, Hanssen, LLP, Hentges, LD, Crump, N, Downes, DJ, Jeziorska, DM, Oudelaar, AM, Schwessinger, R, Taylor, S, Milne, TA, Hughes, JR, Higgs, DR, Davies, JOJ

“…In higher eukaryotes, many genes are regulated by enhancers that are 104–106 base pairs (bp) away from the promoter. Enhancers contain transcription-factor-binding sites (which are typically around 7–22 bp), and physical contact between the promoters and enhancers is thought to be required to modulate gene expression. …”

Increased leukotoxin production: Characterization of 100 base pairs within the 530 base pair leukotoxin promoter region of Aggregatibacter actinomycetemcomitans by Vandana Sampathkumar, Senthil Kumar Velusamy, Dipti Godboley, Daniel H. Fine

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Detecting large deletions at base pair level by combining split read and paired read data by Matthew Hayes, Jeremy S. Pearson

“…We have generalized the framework of a previously-published algorithm that located translocations, and we have applied that framework to develop a method to locate deletions at base pair level using next-generation sequencing data. …”
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Halogen-Bonded Guanine Base Pairs, Quartets and Ribbons by Nicholas J. Thornton, Tanja van Mourik

Subjects: “…guanine–guanine base pair…”
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Metal-mediated base pairs in parallel-stranded DNA by Jens Müller

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Sequence dependence of transient Hoogsteen base pairing in DNA. by Alberto Pérez de Alba Ortíz, Jocelyne Vreede, Bernd Ensing

“…Hoogsteen (HG) base pairing is characterized by a 180° rotation of the purine base with respect to the Watson-Crick-Franklin (WCF) motif. …”
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Unusual Base-Pairing Interactions in Monomer–Template Complexes by Wen Zhang, Chun Pong Tam, Jiawei Wang, Jack W. Szostak

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Joint disease-specificity at the regulatory base-pair level by Pushpanathan Muthuirulan, Dewei Zhao, Mariel Young, Daniel Richard, Zun Liu, Alireza Emami, Gabriela Portilla, Shayan Hosseinzadeh, Jiaxue Cao, David Maridas, Mary Sedlak, Danilo Menghini, Liangliang Cheng, Lu Li, Xinjia Ding, Yan Ding, Vicki Rosen, Ata M. Kiapour, Terence D. Capellini

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The effect of base-pair sequence on electrochemically driven denaturation. by Johnson, R, Gao, R, Brown, T, Bartlett, P

N1...N3 hydrogen bonds of A:U base pairs of RNA are stronger than those of A:T base pairs of DNA. by Vakonakis, I, LiWang, A

“…Trans-hydrogen-bond deuterium isotope effects of Watson-Crick A:U and A:T base pairs of 10 homologous RNA and DNA duplexes are compared. …”