Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network by Xuechun Xu, Nayanika Bhalla, Patrik Ståhl, Joakim Jaldén

Subjects: “…Basecalling…”
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Comprehensive benchmark and architectural analysis of deep learning models for nanopore sequencing basecalling by Marc Pagès-Gallego, Jeroen de Ridder

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Nanopore basecalling from a perspective of instance segmentation by Yao-zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi

Subjects: “…Nanopore basecalling…”
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Estimated Nucleotide Reconstruction Quality Symbols of Basecalling Tools for Oxford Nanopore Sequencing by Wiktor Kuśmirek

Subjects: “…basecalling…”
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Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres by Kar-Tong Tan, Michael K. Slevin, Matthew Meyerson, Heng Li

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Performance of neural network basecalling tools for Oxford Nanopore sequencing by Ryan R. Wick, Louise M. Judd, Kathryn E. Holt

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TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filtering by Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, Can Firtina, Joël Lindegger, Mohammad Sadrosadati, Nika Mansouri Ghiasi, Can Alkan, Onur Mutlu

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Basecalling Using Joint Raw and Event Nanopore Data Sequence-to-Sequence Processing by Adam Napieralski, Robert Nowak

Subjects: “…basecalling…”
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RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data by Don Neumann, Anireddy S. N. Reddy, Asa Ben-Hur

Subjects: “…RNA basecalling…”
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RUBICON: a framework for designing efficient deep learning-based genomic basecallers by Gagandeep Singh, Mohammed Alser, Kristof Denolf, Can Firtina, Alireza Khodamoradi, Meryem Banu Cavlak, Henk Corporaal, Onur Mutlu

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High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing by Nick Vereecke, Jade Bokma, Freddy Haesebrouck, Hans Nauwynck, Filip Boyen, Bart Pardon, Sebastiaan Theuns

Subjects: “…Basecalling…”
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Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network by Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu

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De novo basecalling of RNA modifications at single molecule and nucleotide resolution by Sonia Cruciani, Anna Delgado-Tejedor, Leszek P. Pryszcz, Rebeca Medina, Laia Llovera, Eva Maria Novoa

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Self-Supervised Representation Learning for Basecalling Nanopore Sequencing Data by Carlos Vintimilla, Sangheum Hwang

Subjects: “…Basecalling…”
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Species-specific basecallers improve actual accuracy of nanopore sequencing in plants by Scott Ferguson, Todd McLay, Rose L. Andrew, Jeremy J. Bruhl, Benjamin Schwessinger, Justin Borevitz, Ashley Jones

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GCRTcall: a transformer based basecaller for nanopore RNA sequencing enhanced by gated convolution and relative position embedding via joint loss training by Qingwen Li, Qingwen Li, Chen Sun, Daqian Wang, Jizhong Lou, Jizhong Lou, Jizhong Lou

Subjects: “…basecaller…”
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