Bringing Biocuration to China by Zhang Zhang, Weimin Zhu, Jingchu Luo

Subjects: “…Biocuration…”
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Biocuration: distilling data into knowledge by International Society for Biocuration

“…Strides have recently been made, but more awareness is needed of the essential role that biological data resources, including biocuration, play in maintaining and linking this ever-growing flood of data and information. …”

Biocuration - mapping resources and needs by Holinski, A, Burke, ML, Morgan, SL, McQuilton, P, Palagi, PM

“…However, they may not self-identify as biocurators, as they may be unaware of biocuration as a career path or because biocuration is only part of their role. …”

Help biocurators to maximize the reach of your data by Alexander Holmes, Denise Carvalho-Silva, Zbyslaw Sondka, Madiha Ahmed, Joanna Argasinska, Rachel Lyne, Amaia Sangrador-Vegas, Sari Ward

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IMGT^® Biocuration and Analysis of the Rhesus Monkey IG Loci by Viviane Nguefack Ngoune, Morgane Bertignac, Maria Georga, Ariadni Papadaki, Alexandre Albani, Géraldine Folch, Joumana Jabado-Michaloud, Véronique Giudicelli, Patrice Duroux, Marie-Paule Lefranc, Sofia Kossida

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Biocuration - mapping resources and needs [version 1; peer review: 2 approved] by Alexandra Holinski, Melissa L. Burke, Sarah L. Morgan, Peter McQuilton, Patricia M. Palagi

“…However, they may not self-identify as biocurators, as they may be unaware of biocuration as a career path or because biocuration is only part of their role. …”
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Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases by Qingyu Chen, Ramona Britto, Ivan Erill, Constance J. Jeffery, Arthur Liberzon, Michele Magrane, Jun-ichi Onami, Marc Robinson-Rechavi, Jana Sponarova, Justin Zobel, Karin Verspoor

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The Jatinangoriense Herbarium as Learning Innovations within the Independent Learning Independent Campus (MBKM) by Budi Irawan, Eneng Nunuz Rohmatullayaly

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Automatic identification of scientific publications describing digital reconstructions of neural morphology by Patricia Maraver, Carolina Tecuatl, Giorgio A. Ascoli

Subjects: “…Biocuration…”
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Xenogeneic mesenchymal stem cell biocurative improves skin wounds healing in diabetic mice by increasing mast cells and the regenerative profile by Gabriel Martins da Costa Manso, Jefferson Elias-Oliveira, Jhefferson Barbosa Guimarães, Ítalo Sousa Pereira, Vanessa Fernandes Rodrigues, Beatriz Burger, Daianne Maciely Carvalho Fantacini, Lucas Eduardo Botelho de Souza, Hosana Gomes Rodrigues, Vânia Luiza Deperon Bonato, João Santana Silva, Simone Gusmão Ramos, Rita Cassia Tostes, Adriana Oliveira Manfiolli, Carolina Caliari-Oliveira, Daniela Carlos

“…The healing process, after the application of biocuratives with or without MSCs was histologically analyzed. …”
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Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily by Sushma Naithani, Daemon Dikeman, Priyanka Garg, Noor Al-Bader, Pankaj Jaiswal

“…We propose a nomenclature for 144 SDRLK gene family members based on gene/protein conserved structural features, gene expression profiles, and literature review. Our biocuration approach, rooted in the principles of findability, accessibility, interoperability and reusability, sets forth an example of how manual annotation of large-gene families can fill in the knowledge gap that exists due to the implementation of automated GO projections, thereby helping to improve the quality and contents of public databases.…”
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IMGT^® Biocuration and Comparative Analysis of <i>Bos taurus</i> and <i>Ovis aries</i> TRA/TRD Loci by Perrine Pégorier, Morgane Bertignac, Viviane Nguefack Ngoune, Géraldine Folch, Joumana Jabado-Michaloud, Véronique Giudicelli, Patrice Duroux, Marie-Paule Lefranc, Sofia Kossida

“…The TR<inline-formula><math display="inline"><semantics><mi>α</mi></semantics></math></inline-formula> locus (TRA) and TR<inline-formula><math display="inline"><semantics><mi>δ</mi></semantics></math></inline-formula> locus (TRD) of bovine (<i>Bos taurus</i>) and the sheep (<i>Ovis aries</i>) have recently been described and annotated by IMGT^® biocurators. The aim of the present study is to present the results of the biocuration and to compare the genes of the TRA/TRD loci among these ruminant species based on the <i>Homo sapiens</i> repertoire. …”
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Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>) by Sushma Naithani, Bijayalaxmi Mohanty, Justin Elser, Peter D’Eustachio, Pankaj Jaiswal

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Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB by Marc Feuermann, Emmanuel Boutet, Anne Morgat, Kristian B. Axelsen, Parit Bansal, Jerven Bolleman, Edouard de Castro, Elisabeth Coudert, Elisabeth Gasteiger, Sébastien Géhant, Damien Lieberherr, Thierry Lombardot, Teresa B. Neto, Ivo Pedruzzi, Sylvain Poux, Monica Pozzato, Nicole Redaschi, Alan Bridge, on behalf of the UniProt Consortium

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Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases by Jean-Marie Ravel, L. Cristobal Monraz Gomez, Nicolas Sompairac, Laurence Calzone, Boris Zhivotovsky, Guido Kroemer, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein

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COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms by Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta‐Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, Devasahayam Arokia Balaya Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic‐Milacic, Andrea Senff-Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean‐Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban‐Medina, Maria Peña‐Chilet, Kinza Rian, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurélien Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Willighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez‐Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID‐19 Disease Map Community

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Risk of drug use during pregnancy: master protocol for living systematic reviews and meta-analyses performed in the metaPreg project by Cyndie Picot, Priscilla Ajiji, Lucie Jurek, Mikail Nourredine, Jérôme Massardier, Audrey Peron, Michel Cucherat, Judith Cottin

“…Study screening and data extraction will be performed in a semi-automation way supervised by a biocurator. A risk of bias will be assessed using the ROBINS-I tools. …”
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Overview of the interactive task in BioCreative V by Wang, Q, Abdul, SS, Almeida, L, Ananiadou, S, Balderas-Martınez, YI, Batista-Navarro, R, Campos, D, Chilton, L, Chou, H-J, Contreras, G, Cooper, L, Dai, H-J, Ferrell, B, Fluck, J, Gama-Castro, S, George, N, Gkoutos, G, Irin, AK, Jensen, LJ, Jimenez, S, Jue, TR, Keseler, I, Madan, S, Matos, S, McQuilton, P, Milacic, M, Mort, M, Natarajan, J, Pafilis, E, Pereira, E, Rao, S, Rinaldi, F, Rothfels, K, Salgado, D, Silva, RM, Singh, O, Stefancsik, R, Su, C-H, Subramani, S, Tadepally, HD, Tsaprouni, L, Vasilevsky, N, Wang, X, Chatr-Aryamontri, A, Laulederkind, SJF, Matis-Mitchell, S, McEntyre, J, Orchard, S, Pundir, S, Rodriguez-Esteban, R, Van Auken, K, Lu, Z, Schaeffer, M, Wu, CH, Hirschman, L, Arighi, CN

“…The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. …”

EFFECT OF SOME BIOLOGICAL AND CHEMICAL PESTICIDES IN CONTROLLING TUTA ABSOLUTA OF TOMATO by Haitham M.. M., M. A Birwari, S. Abd AL-Qadir

“…The results revealed that the lowest percentage of leaf infection and the lowest number of larvae appeared with plants treated with Biocure, with an average of 22.7% and 0.36 larva/leaf, respectively. …”
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A FAIR-Based Approach to Enhancing the Discovery and Re-Use of Transcriptomic Data Assets for Nuclear Receptor Signaling Pathways by Scott A. Ochsner, Yolanda F. Darlington, Apollo McOwiti, Wasula H. Kankanamge, Alexey Naumov, Lauren B. Becnel, Neil J. McKenna

“…To improve findability, biocurators engage authors of studies in collaborating journals to secure datasets for deposition in public archives. …”
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