Recurrent and functional regulatory mutations in breast cancer by Parasuraman, Prasanna, Tiao, Grace, Kim, Jaegil, Taylor-Weiner, Amaro, Rodriguez-Cuevas, Sergio, Rosenberg, Mara, Hess, Julian, Stewart, Chip, Maruvka, Yosef E., Stojanov, Petar, Seepo, Sara, Cibulskis, Carrie, Tracy, Adam, Pugh, Trevor J., Lee, Jesse, Zheng, Zongli, Ellisen, Leif W., Iafrate, A. John, Boehm, Jesse S., Baselga, Jose, Hidalgo-Miranda, Alfredo, Shioda, Toshi, Bernards, Andre, Engreitz, Jesse Michael, Lander, Eric Steven, Rheinbay, Esther, Lawrence, Michael, Cortes, Maria, Gabriel, Stacey, Golub, Todd, Getz, Gad Asher, Meyerson, Matthew L.

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Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal by Kearney, Sean M, Gibbons, Sean Michael, Erdman, Susan E, Alm, Eric J

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Genome-wide CRISPR screen for Zika virus resistance in human neural cells by Li, Yun, Muffat, Julien, Omer Javed, Attya, Keys, Heather R., Lungjangwa, Tenzin, Bosch, Irene, Khan, Mehreen, Virgilio, Maria C., Gehrke, Lee, Sabatini, David M., Jaenisch, Rudolf

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Adaptive Evolution within Gut Microbiomes of Healthy People by Zhao, Shijie, Lieberman, Tami, Poyet, Mathilde, Kauffman, Kathryn, Gibbons, Sean M., Groussin, Mathieu, Xavier, Ramnik J., Alm, Eric J

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Genetic Encoding of Targeted Magnetic Resonance Imaging Contrast Agents for Tumor Imaging by Schuerle, Simone, Furubayashi, Maiko, Soleimany, Ava P., Gwisai, Tinotenda, Huang, Wei, Voigt, Christopher A., Bhatia, Sangeeta N

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A systems biology pipeline identifies regulatory networks for stem cell engineering by Kinney, Melissa A., Vo, Linda T., Frame, Jenna M., Barragan, Jessica, Conway, Ashlee J., Li, Shuai, Wong, Kwok-Kin, Collins, James J., Cahan, Patrick, North, Trista E., Lauffenburger, Douglas A, Daley, George Q.

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Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles by Sinha, Trishla, Vich Vila, Arnau, Garmaeva, Sanzhima, Jankipersadsing, Soesma A., Imhann, Floris, Collij, Valerie, Bonder, Marc Jan, Jiang, Xiaofang, Gurry, Thomas Jerome, Alm, Eric J, D’Amato, Mauro, Weersma, Rinse K., Scherjon, Sicco, Wijmenga, Cisca, Fu, Jingyuan, Kurilshikov, Alexander, Zhernakova, Alexandra

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Interleukin-6 deficiency exacerbates Huntington’s disease model phenotypes by Wertz, Mary H., Pineda, S. Sebastian, Lee, Hyeseung, Kulicke, Ruth, Kellis, Manolis, Heiman, Myriam

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Rapid SARS-CoV-2 testing in primary material based on a novel multiplex RT-LAMP assay by Schermer, Bernhard, Fabretti, Francesca, Damagnez, Maximilian, Di Cristanziano, Veronica, Heger, Eva, Arjune, Sita, Tanner, Nathan A., Imhof, Thomas, Koch, Manuel, Ladha, Alim, Joung, Julia, Gootenberg, Jonathan S, Abudayyeh, Omar O., Burst, Volker, Zhang, Feng, Klein, Florian, Benzing, Thomas, Müller, Roman-Ulrich

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Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations by Fulco, Charles P., Nasser, Joseph, Jones, Thouis R., Munson, Glen, Bergman, Drew T., Subramanian, Vidya, Grossman, Sharon Rachel, Anyoha, Rockwell, Doughty, Benjamin R., Patwardhan, Tejal A., Nguyen, Tung Hoang, Kane, Michael A., Perez, Elizabeth M., Durand, Neva C., Lareau, Caleb A., Stamenova, Elena K., Aiden, Erez Lieberman, Lander, Eric Steven, Engreitz, Jesse Michael

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Distinct subnetworks of the thalamic reticular nucleus by Li, Yinqing, Lopez Huerta, Violeta, Adiconis, Xian, Levandowski, Kirsten, Choi, Soonwook, Simmons, Sean K., Arias-Garcia, Mario A., Guo, Baolin, Yao, Annie, Blosser, Timothy R., Wimmer, Ralf D, Aida, Tomomi, Atamian, Alexander, Naik, Tina, Sun, Xuyun, Bi, Dasheng, Malhotra, Diya, Hession, Cynthia C., Shema Tirosh, Reut, Gomes, Marcos, Li, Taibo, Hwang, Eunjin, Krol, Alexandra, Kowalczyk, Monika, Peça, João, Pan, Gang, Halassa, Michael, Levin, Joshua Z., Fu, Zhanyan, Feng, Guoping

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A cell-based drug delivery platform for treating central nervous system inflammation by Levy, Oren, Rothhammer, Veit, Mascanfroni, Ivan, Tong, Zhixiang, Kuai, Rui, De Biasio, Michael, Wang, Qingping, Majid, Tahir, Perrault, Christelle, Yeste, Ada, Kenison, Jessica E., Safaee, Helia, Musabeyezu, Juliet, Heinelt, Martina, Milton, Yuka, Kuang, Heidi, Lan, Haoyue, Siders, William, Multon, Marie-Christine, Rothblatt, Jonathan, Massadeh, Salam, Alaamery, Manal, Alhasan, Ali H., Quintana, Francisco J., Karp, Jeffrey Michael

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Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings by Cleary, Brian Lowman, Hay, James A., Blumenstiel, Brendan, Harden, Maegan, Cipicchio, Michelle, Bezney, Jon, Simonton, Brooke, Hong, David, Senghore, Madikay, Sesay, Abdul K., Gabriel, Stacey, Regev, Aviv, Mina, Michael J.

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Gamma entrainment using audiovisual stimuli alleviates chemobrain pathology and cognitive impairment induced by chemotherapy in mice by Kim, TaeHyun, James, Benjamin T., Kahn, Martin C., Blanco-Duque, Cristina, Abdurrob, Fatema, Islam, Md Rezaul, Lavoie, Nicolas S., Kellis, Manolis, Tsai, Li-Huei

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BRNI: Modular analysis of transcriptional regulatory programs by Nachman, Iftach, Regev, Aviv

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression by Presser, Aviva, Guttman, Mitchell, Raj, Arjun, van Oudenaarden, Alexander, Rinn, John L., Lander, Eric S., Regev, Aviv, Bernstein, Bradley E., Thomas, Kelly, Morales, Dianali Rivea, Garber, Manuel, Khalil, Ahmad M., Huarte, Maite

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Childhood Adversities Are Associated with Shorter Telomere Length at Adult Age both in Individuals with an Anxiety Disorder and Controls by Peltonen, Leena

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Major copy proportion analysis of tumor samples using SNP arrays by Li, Cheng, Beroukhim, Rameen, Weir, Barbara A., Winckler, Wendy, Garraway, Levi A., Sellers, William R., Meyerson, Matthew L.

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Phenotype-genotype association grid: a convenient method for summarizing multiple association analyses by Levy, Daniel, DePalma, Steven R., Benjamin, Emelia J., O'Donnell, Christopher J., Parise, Helen, Hirschhorn, Joel N., Vasan, Ramachandran S., Izumo, Seigo, Larson, Martin G.

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Cross-kingdom patterns of alternative splicing and splice recognition by McGuire, Abigail Manson, Pearson, Matthew D., Neafsey, Daniel E., Galagan, James E.

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