How Large Should the QM Region Be in QM/MM Calculations? The Case of Catechol O-Methyltransferase by Zhang, Jianyu, Klinman, Judith P., Martínez, Todd J., Kulik, Heather Janine

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Depolymerization Pathways for Branching Lignin Spirodienone Units Revealed with ab Initio Steered Molecular Dynamics by Mar, Brendan D., Kulik, Heather Janine

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GC-Rich Sequence Elements Recruit PRC2 in Mammalian ES Cells by Mendenhall, Eric M., Koche, Richard Patrick, Truong, Thanh, Zhou, Vicky W., Issac, Biju, Chi, Andrew S., Ku, Manching, Bernstein, Bradley E.

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Caenorhabditis elegans NPR-1–mediated behaviors are suppressed in the presence of mucoid bacteria by Reddy, Kirthi C., Hunter, Ryan C., Bhatla, Nikhil, Newman, Dianne K., Kim, Dennis H.

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Structural Dynamics of Synapses in Vivo Correlate with Functional Changes during Experience-Dependent Plasticity in Visual Cortex by Tropea, Daniela, Majewska, Ania K., Garcia, Rodrigo, Sur, Mriganka

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Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer by Steine, Eveline J., Ehrich, Mathias, Bell, George W., Raj, Arjun, Reddy, Seshamma, van Oudenaarden, Alexander, Jaenisch, Rudolf, Linhart, Heinz G.

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A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection by Shapira, Sagi D., Gat-Viks, Irit, Shum, Bennett O. V., Dricot, Amelie, DeGrace, Marciela M., Wu, Liguo, Gupta, Piyush, Hao, Tong, Silver, Serena J., Root, David E., Hill, David E., Regev, Aviv, Hacohen, Nir

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Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis by Locasale, Jason W., Grassian, Alexandra R., Melman, Tamar, Lyssiotis, Costas A., Mattaini, Katherine Ruth, Bass, Adam J., Heffron, Gregory J., Metallo, Christian M., Muranen, Taru, Sharfi, Hadar, Sasaki, Atsuo T., Anastasiou, Dimitrios, Mullarky, Edouard, Vokes, Natalie I., Sasaki, Mika, Beroukhim, Rameen, Stephanopoulos, Gregory, Ligon, Azra H., Meyerson, Matthew L., Richardson, Andrea L., Chin, Lynda, Wagner, Gerhard, Asara, John M., Brugge, Joan S., Cantley, Lewis C., Vander Heiden, Matthew G.

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Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules by Kellis, Manolis, Regev, Aviv, Roy, Sushmita, Wapinski, Ilan, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Konieczka, Jay, Habib, Naomi, Thompson, Dawn

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Systematic Discovery of TLR Signaling Components Delineates Viral-Sensing Circuits by Chevrier, Nicolas, Mertins, Philipp, Artyomov, Maxim N., Shalek, Alex K., Iannacone, Matteo, Ciaccio, Mark F., Gat-Viks, Irit, Tonti, Elena, DeGrace, Marciela M., Clauser, Karl R., Garber, Manuel, Eisenhaure, Thomas, Yosef, Nir, Robinson, Jacob, Sutton, Amy, Andersen, Mette S., Root, David E., von Andrian, Ulrich, Jones, Richard Bradley, Park, Hongkun, Carr, Steven A., Regev, Aviv, Amit, Ido, Hacohen, Nir

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Thalamocortical Mechanisms for the Anteriorization of Alpha Rhythms during Propofol-Induced Unconsciousness by Vijayan, Sujith, Purdon, Patrick Lee, Kopell, Nancy J., Ching, Shinung, Brown, Emery Neal

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Single particle tracking reveals spatial and dynamic organization of the Escherichia coli biofilm matrix by Birjiniuk, Alona, Nance, Elizabeth, Hanes, Justin, Ribbeck, Katharina, Billings, Amanda Nicole, Doyle, Patrick S.

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Analysis and prediction of defects in UV photo-initiated polymer microarrays by Hook, Andrew L., Scurr, David J., Burley, Jonathan C., Anderson, Daniel Griffith, Davies, Martyn C., Alexander, Morgan R., Langer, Robert S

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Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells by Ram, Oren, Goren, Alon, Amit, Ido, Shoresh, Noam, Yosef, Nir, Ernst, Jason, Kellis, Manolis, Issner, Robbyn, Durham, Timothy, Zhang, Xiaolan, Donaghey, Julie, Epstein, Charles B., Regev, Aviv, Bernstein, Bradley E., Gymrek, Melissa A., Coyne, Michael J.

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Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis by Novershtern, Noa, Subramanian, Aravind, Lawton, Lee N., Mak, Raymond H., Haining, W. Nicholas, McConkey, Marie, Habib, Naomi, Yosef, Nir, Chang, Cindy Y., Shay, Tal, Frampton, Garrett M., Leskov, Ilya B., Nilsson, Bjorn, Preffer, Fred, Dombkowski, David, Evans, John W., Liefeld, Ted, Smutko, John S., Chen, Jianzhu, Friedman, Nir, Young, Richard A., Golub, Todd R., Regev, Aviv, Ebert, Benjamin L., Drake, Adam

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Determinants of Divergent Adaptation and Dobzhansky-Muller Interaction in Experimental Yeast Populations by Anderson, James B., Funt, Jason, Thompson, Dawn Anne, Prabhu, Snehit, Socha, Amanda, Sirjusingh, Caroline, Dettman, Jeremy R., Parreiras, Lucas, Guttman, David S., Regev, Aviv, Kohn, Linda M.

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Addressing the challenges of implementing evidence-based prioritisation in global health by Amanda McClelland, Richard Garfield, Louis J Muglia, David T S Hayman, Kashef Ijaz, Chris Atim, Rosemary K Barraclough, Victoria McGovern, Muhammed O. Afolabi, Alhaji U N'Jai, Jennyfer R. Ambe, Beverley Paterson, Jennifer Lasley, Qadeer Ahsan, Kendra Chittenden, Alexandra L. Phelan, Abigail Lopez Rivera

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Dense phenotyping from electronic health records enables machine learning-based prediction of preterm birth by Abin Abraham, Brian Le, Idit Kosti, Peter Straub, Digna R. Velez-Edwards, Lea K. Davis, J. M. Newton, Louis J. Muglia, Antonis Rokas, Cosmin A. Bejan, Marina Sirota, John A. Capra

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Nkx2-1 Represses a Latent Gastric Differentiation Program in Lung Adenocarcinoma by Snyder, Eric L., Watanabe, Hideo, Magendantz, Margaret, Hoersch, Sebastian, Chen, Tiffany A., Wang, Diana G., Whittaker, Charles A., Meyerson, Matthew L., Kimura, Shioko, Chen, Tiffany A., Wang, Diana G., Whittaker, Charles A., Crowley, Denise G., Jacks, Tyler E, Snyder, Eric

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A Novel Nonparametric Approach for Neural Encoding and Decoding Models of Multimodal Receptive Fields by Agarwal, Rahul, Chen, Zhe, Kloosterman, Fabian, Wilson, Matthew A., Sarma, Sridevi V.

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