The global transcriptome of Plasmodium falciparum mid-stage gametocytes (stages II–IV) appears largely conserved and gametocyte-specific gene expression patterns vary in clinical i... by Jonas A. Kengne-Ouafo, Saikou Y. Bah, Alison Kemp, Lindsay Stewart, Lucas Amenga-Etego, Kirk W. Deitsch, Julian C. Rayner, Oliver Billker, Fred N. Binka, Colin J. Sutherland, Gordon A. Awandare, Britta C. Urban, Bismarck Dinko

“…A majority of gametocyte-specific genes (43/53) appear to have relatively higher expression in CI-derived gametocytes than in LS-derived gametocytes, but a K-means clustering analysis showed that genes involved in flagellum- and microtubule-based processes (movement/motility) were more abundant in both groups, albeit with some differences between them. …”
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Malignant peripheral nerve sheath tumor (MPNST) and MPNST-like entities are defined by a specific DNA methylation profile in pediatric and juvenile population by Sara Patrizi, Evelina Miele, Lorenza Falcone, Silvia Vallese, Sabrina Rossi, Sabina Barresi, Isabella Giovannoni, Lucia Pedace, Claudia Nardini, Ilaria Masier, Luana Abballe, Antonella Cacchione, Ida Russo, Angela Di Giannatale, Valentina Di Ruscio, Claudia Maria Salgado, Angela Mastronuzzi, Andrea Ciolfi, Marco Tartaglia, Giuseppe Maria Milano, Franco Locatelli, Rita Alaggio

“…Two high-grade and 4 low-grade lesions harbored tyrosine kinase (TRK) gene fusions. By HDBSCAN clustering analysis of the whole cohort we identified two clusters mainly distinguished by H3K27me3 epigenetic signature. …”
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Ferroptosis-Related Genes Are Potential Therapeutic Targets and the Model of These Genes Influences Overall Survival of NSCLC Patients by Na Zhang, Yangyang Wu, Yifan Wu, Lihong Wang, Jingfei Chen, Xiaosa Wang, Louisa S. Chard Dunmall, Zhenguo Cheng, Yaohe Wang

“…Gene expression profiles, copy number variations and somatic mutations of 57 ferroptosis-related genes in 1727 tumor samples from the four datasets were used in a univariate Cox analysis and consensus clustering analysis. The biological signatures of each pattern were identified. …”
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Clustering of narratives of the “Sang-e Saboor” folktale by Mostafa Saadat, Ahmad Reza Khosrawy

“…Methodology In order to verify the validity of this hypothesis, in the present study, phenetics clustering analysis of 37 narratives of Sang-e Saboor in Iranian populations (Anjavi-Shirazi 2015, 317-390; Qatali 2010, 229-332; Ardalani 2003; 233-236; Elwell-Sutton 2007, 368-374; Behrangi and Dehqani 2002, 128-132; Pak 2012, 65-67; Sarfi 2008, 21-24; Fagiri 2003, 57-60; Arji 2006, 125-128; Takahara and Vakilian 2002, 97-100; Moaed-Mohseni 2002, 567-568) and a narrative from Afghanistan (Herat) was carried out (Rahmani 1998, 142-146). …”
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Identification of Extreme Precipitation Events in the West of Iran (1965-2016) by saeid Jahanbakhshasl, Behrouz Sari Sarraf, Hossein asakereh, soheila shirmohamadi

“…Moreover, the sea-level pressure patterns were extracted with regard to these precipitations for each zone andthen classified using clustering analysis technique.Results and Discussionthree groups of precipitations with different coverage zoneswere identified: 1- 83 days with equal to or more precipitation than the mean of precipitations more than 75th percentile plus one time standard deviation which cover more than 40% of the region. 2- 144 days with equal to or more precipitation than the mean of precipitations more than 75th percentile plus two times standard deviation which cover more than 20% of the region. 3- 82 days with equal to or more precipitation than the mean of precipitations more than 75th percentile plus three times standard deviation which cover more than 20%The maps of 7 participation groups of the first type in comparison with 6 precipitation groups of the second and third type contain common and repetitive patterns. …”
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A single‐cell atlas of bovine skeletal muscle reveals mechanisms regulating intramuscular adipogenesis and fibrogenesis by Leshan Wang, Peidong Gao, Chaoyang Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth McMillin, Stephanie Oprescu, Shihuan Kuang, Xing Fu

“…Sophisticated bioinformatics analyses, including clustering analysis, gene set enrichment analyses, gene regulatory network construction, RNA velocity, pseudotime analysis, and cell–cell communication analysis, were performed to elucidate heterogeneities and differentiation processes of individual cell types and differences between cattle breeds. …”
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Yiqi Huayu decoction alleviates bleomycin-induced pulmonary fibrosis in rats by inhibiting senescence by Biao Zuo, Biao Zuo, Ling Zuo, Ling Zuo, Xu-Qin Du, Xu-Qin Du, Su Yuan, Su Yuan, Chen Xuan, Chen Xuan, Yu-Di Zhang, Yu-Di Zhang, Zhi-Wei Chen, Zhi-Wei Chen, Wen-Fu Cao, Wen-Fu Cao

“…Molecular Complex Detection (MCODE) clustering analysis combined with enrichment analysis can explore the possible biological mechanisms of YHD. …”
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Identification and validation of a dysregulated TME-related gene signature for predicting prognosis, and immunological properties in bladder cancer by Chong Shen, Chong Shen, Wang Chai, Wang Chai, Jingwen Han, Jingwen Han, Zhe Zhang, Zhe Zhang, Xuejing Liu, Shaobo Yang, Shaobo Yang, Yinlei Wang, Yinlei Wang, Donghuai Wang, Donghuai Wang, Fangxin Wan, Zhenqian Fan, Hailong Hu, Hailong Hu

“…Finally, real-time PCR validation was performed on 10 paired tissue samples, and in vitro cytological experiments were also conducted on BC cell lines.ResultsIn BC patients, 133 genes differentially expressed that were associated with prognosis in TME. Consensus clustering analysis revealed three distinct clinicopathological characteristics and survival outcomes. …”
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Profiling post-COVID-19 condition across different variants of SARS-CoV-2: a prospective longitudinal study in unvaccinated wild-type, unvaccinated alpha-variant, and vaccinated de... by Liane S Canas, PhD, Erika Molteni, PhD, Jie Deng, PhD, Carole H Sudre, PhD, Benjamin Murray, MSc, Eric Kerfoot, PhD, Michela Antonelli, PhD, Khaled Rjoob, PhD, Joan Capdevila Pujol, PhD, Lorenzo Polidori, MSc, Anna May, MSc, Marc F Österdahl, PhD, Ronan Whiston, PhD, Nathan J Cheetham, PhD, Vicky Bowyer, MSc, Tim D Spector, ProfPhD, Alexander Hammers, ProfPhD, Emma L Duncan, ProfPhD, Sebastien Ourselin, ProfPhD, Claire J Steves, PhD, Marc Modat, PhD

“…We did unsupervised clustering analysis of time-series data to identify distinct symptom profiles for vaccinated and unvaccinated people with post-COVID-19 condition after infection with the wild-type, alpha (B.1.1.7), or delta (B.1.617.2 and AY.x) variants of SARS-CoV-2. …”
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Scientometric analysis on the use of ChatGPT, artificial intelligence, or intelligent conversational agent in the role of medical training by Frank Mayta-Tovalino, Fran Espinoza-Carhuancho, Daniel Alvitez-Temoche, Cesar Mauricio-Vilchez, Arnaldo Munive-Degregori, John Barja-Ore

“…Despite having the highest number of academic publications (15), Brazil had a relatively low field-weighted citation impact (0.64) and received the lowest number of citations (81). A clustering analysis was performed on a sample of 10 concepts using 2 dimensions. …”
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The relationship between galaxies and their dark matter haloes over cosmic time by Hatfield, P

“…</p> <p>I present a series of results from a clustering analysis of the first data release of the Visible and Infrared Survey Telescope for Astronomy (VISTA) Deep Extragalactic Observations (VIDEO) survey. …”

Molecular epidemiology of vancomycin-resistant enterococci isolated from selected human, poultry and pig populations in Peninsular Malaysia by Molla, Yitbarek Getachew

“…Multilocus sequence typing of selected 14 E. faecium and 11 E. faecalis revealed six sequence types (ST) for E. faecium (ST203, ST17, ST55, ST29 and ST79) and E. faecalis (ST4, ST6, ST87, ST108, ST274 and ST244) respectively. Clustering analysis showed that more than 70% of E. faecium and all E. faecalis were hosts specific (human, pig and poultry). …”
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Signatures of cellular immunity after vaccination and challenge that associate with clinical outcome of Salmonella Typhi infection by Cross, D

“…Cellular subsets were identified by clustering analysis and differential abundance of populations after infection were assessed by negative binomial mixture models. …”

Chemical properties and single-particle mixing state of soot aerosol in Houston during the TRACER campaign by R. N. Farley, R. N. Farley, J. E. Lee, L.-H. Rivellini, A. K. Y. Lee, R. Dal Porto, C. D. Cappa, C. D. Cappa, K. Gorkowski, A. S. M. Shawon, K. B. Benedict, A. C. Aiken, M. K. Dubey, Q. Zhang, Q. Zhang

“…Additionally, <span class="inline-formula"><i>K</i></span>-means clustering analysis of the single-particle mass spectra identified eight different clusters, including soot particles enriched in hydrocarbon-like organic aerosol (HOA<span class="inline-formula">_BC,ETSP</span>), sulfate (SO<span class="inline-formula"><math xmlns="http://www.w3.org/1998/Math/MathML" id="M14" display="inline" overflow="scroll" dspmath="mathml"><msub><mi/><mrow><mn mathvariant="normal">4</mn><mo>,</mo><mi mathvariant="normal">BC</mi><mo>,</mo><mi mathvariant="normal">ETSP</mi></mrow></msub></math><span><svg:svg xmlns:svg="http://www.w3.org/2000/svg" width="43pt" height="9pt" class="svg-formula" dspmath="mathimg" md5hash="72d68c49a1518ee55bc733482bbeeaca"><svg:image xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="acp-24-3953-2024-ie00002.svg" width="43pt" height="9pt" src="acp-24-3953-2024-ie00002.png"/></svg:svg></span></span>), two types of rBC, OOA (OOA<span class="inline-formula">_BC,ETSP</span>), chloride (Cl<span class="inline-formula">_BC,ETSP</span>), and nitrate (NO<span class="inline-formula"><math xmlns="http://www.w3.org/1998/Math/MathML" id="M17" display="inline" overflow="scroll" dspmath="mathml"><msub><mi/><mrow><mn mathvariant="normal">3</mn><mo>,</mo><mi mathvariant="normal">BC</mi><mo>,</mo><mi mathvariant="normal">ETSP</mi></mrow></msub></math><span><svg:svg xmlns:svg="http://www.w3.org/2000/svg" width="43pt" height="9pt" class="svg-formula" dspmath="mathimg" md5hash="72cb7437f18a74c9aeefe1e1cb5aab74"><svg:image xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="acp-24-3953-2024-ie00003.svg" width="43pt" height="9pt" src="acp-24-3953-2024-ie00003.png"/></svg:svg></span></span>). …”
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Characteristics and degradation of organic aerosols from cooking sources based on hourly observations of organic molecular markers in urban environments by R. Li, R. Li, K. Zhang, K. Zhang, Q. Li, Q. Li, L. Yang, L. Yang, S. Wang, S. Wang, Z. Liu, Z. Liu, Z. Liu, X. Zhang, X. Zhang, X. Zhang, H. Chen, H. Chen, Y. Yi, Y. Yi, J. Feng, J. Feng, Q. Wang, L. Huang, L. Huang, W. Wang, W. Wang, Y. Wang, Y. Wang, J. Z. Yu, J. Z. Yu, L. Li, L. Li

“…By performing backward trajectory clustering analysis, under the influence of short-distance air masses from surrounding areas, the concentrations of TFAs and PM<span class="inline-formula">_2.5</span> were relatively high, while under the influence of air masses from easterly coastal areas, the oxidation degree of uFAs emitted from local culinary sources was higher. …”
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