Coarse-graining DNA for simulations of DNA nanotechnology. by Doye, J, Ouldridge, T, Louis, A, Romano, F, Šulc, P, Matek, C, Snodin, B, Rovigatti, L, Schreck, J, Harrison, R, Smith, W

“…To simulate long time and length scale processes involving DNA it is necessary to use a coarse-grained description. …”

Coarse-grained modeling of DNA and DNA nanotechnology by Ouldridge, T, Sulc, P, Romano, F, Louis, A, Doye, J

DNA hairpins: fuel for autonomous DNA devices. by Green, S, Lubrich, D, Turberfield, A

“…We present a study of the hybridization of complementary DNA hairpin loops, with particular reference to their use as fuel for autonomous DNA devices. …”

PARP1 recruits DNA translocases to restrain DNA replication and facilitate DNA repair. by Yen-Chih Ho, Chen-Syun Ku, Siang-Sheng Tsai, Jia-Lin Shiu, Yi-Zhen Jiang, Hui Emmanuela Miriam, Han-Wen Zhang, Yen-Tzu Chen, Wen-Tai Chiu, Song-Bin Chang, Che-Hung Shen, Kyungjae Myung, Peter Chi, Hungjiun Liaw

“…Replication fork reversal which restrains DNA replication progression is an important protective mechanism in response to replication stress. …”
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Electrochemical DNA Sensors with Layered Polyaniline—DNA Coating for Detection of Specific DNA Interactions by Tatjana Kulikova, Anna Porfireva, Gennady Evtugyn, Tibor Hianik

Subjects: “…electrochemical DNA sensor…”
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Stability of mRNA/DNA and DNA/DNA duplexes affects mRNA transcription. by Rayna I Kraeva, Dragomir B Krastev, Assen Roguev, Anna Ivanova, Marina N Nedelcheva-Veleva, Stoyno S Stoynov

“…In this work, we present a calculation of thermodynamic stability of DNA/DNA and mRNA/DNA duplexes across the genomes of four species in the genus Saccharomyces by nearest-neighbor method. …”
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cDNA-detector: detection and removal of cDNA contamination in DNA sequencing libraries by Meifang Qi, Utthara Nayar, Leif S. Ludwig, Nikhil Wagle, Esther Rheinbay

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Human RAD52 Captures and Holds DNA Strands, Increases DNA Flexibility, and Prevents Melting of Duplex DNA: Implications for DNA Recombination by Ineke Brouwer, Hongshan Zhang, Andrea Candelli, Davide Normanno, Erwin J.G. Peterman, Gijs J.L. Wuite, Mauro Modesti

“…Human RAD52 promotes annealing of complementary single-stranded DNA (ssDNA). In-depth knowledge of RAD52-DNA interaction is required to understand how its activity is integrated in DNA repair processes. …”
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ASSESSMENT OF IgG AUTOANTIBODIES TO SINGLE-STRANDED DNA (ss-DNA) AND DOUBLE-STRANDED DNA (ds-DNA) IN PATIENTS WITH ACANTHOLYTIC PEMPHIGUS by Sh. Z. Мavlyanova, M. S. Mutavaliev, A. I. Ismogilov, J. B. Mullakhanov, Yu. A. Alimukhamedova

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How Well Can DNA Rupture DNA? Shearing and Unzipping Forces inside DNA Nanostructures by Shern Ren Tee, Zhisong Wang

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Increasing the minicircle DNA purity using an enhanced triplex DNA technology to eliminate DNA contaminants by Xiaohu H Hou, Xiaoyan Y Guo, Yusheng Chen, Cheng-Yi He, Zhi-Ying Chen

“…DNA vectors for human gene therapy have to meet the efficacy and safety requirements. …”
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Simulation of DNA damage using Geant4‐DNA: an overview of the “molecularDNA” example application by Konstantinos P. Chatzipapas, Ngoc Hoang Tran, Milos Dordevic, Sara Zivkovic, Sara Zein, Wook‐Geun Shin, Dousatsu Sakata, Nathanael Lampe, Jeremy M. C. Brown, Aleksandra Ristic‐Fira, Ivan Petrovic, Ioanna Kyriakou, Dimitris Emfietzoglou, Susanna Guatelli, Sébastien Incerti

Subjects: “…DNA damage…”
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Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution. by Kapanidis, A, Ebright, Y, Ludescher, R, Chan, S, Ebright, R

“…In order to define the mean DNA bend angle and distribution of DNA bend angles in the catabolite activator protein (CAP)-DNA complex in solution under standard transcription initiation conditions, we have performed nanosecond time-resolved fluorescence measurements quantifying energy transfer between a probe incorporated at a specific site in CAP, and a complementary probe incorporated at each of five specific sites in DNA. …”

The DNA-remodelling activity of DnaD is the sum of oligomerization and DNA-binding activities on separate domains. by Carneiro, M, Zhang, W, Ioannou, C, Scott, D, Allen, S, Roberts, C, Soultanas, P

“…The Bacillus subtilis DnaD protein is an essential protein that has been implicated in the primosomal step of DNA replication, and recently in global DNA remodelling. …”

DNA Materials Assembled from One DNA Strand by Jiezhong Shi, Ben Zhang, Tianyi Zheng, Tong Zhou, Min Guo, Ying Wang, Yuanchen Dong

Subjects: “…DNA materials…”
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DNA multilayer film for loading and release of DNA oligomer by Kamimura Y., Kato N.

“…Besides the electrostatic force between positively and negatively charged polyelectrolytes, the hybridization force between complementary DNA strands can be also used for building the DNA LbL films. …”
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Resolving DNA Damage: Epigenetic Regulation of DNA Repair by Panagiotis Karakaidos, Dimitris Karagiannis, Theodoros Rampias

Subjects: “…DNA damage…”
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Regulation of DNA replication by the S-phase DNA damage checkpoint by Rhind Nicholas, Willis Nicholas

“…<p>Abstract</p> <p>Cells slow replication in response to DNA damage. This slowing was the first DNA damage checkpoint response discovered and its study led to the discovery of the central checkpoint kinase, Ataxia Telangiectasia Mutated (ATM). …”
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Collection and storage of DNA-containing biomaterial and isolated DNA by Yu. V. Doludin, A. S. Limonova, V. A. Kozlova, A. I. Efimova, A. L. Borisova, A. N. Meshkov, M. S. Pokrovskaya, O. M. Drapkina

“…Genomic deoxyribonucleic acid (DNA), extracellular DNA (exDNA) and microbiome DNA obtained from different types of samples (tissues, blood and its derivatives, feces, etc.) are used as objects of genetic research. …”
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DNA Damage, DNA Repair, and Cancer: Second Edition by Kazuhiko Kuwahara

“…Following our first Special Issue, we are pleased to present this Special Issue in the <i>International Journal of Molecular Sciences</i>, titled ‘DNA Damage, DNA Repair, and Cancer: Second Edition’ [...]…”
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