Explainable Data Poison Attacks on Human Emotion Evaluation Systems Based on EEG Signals by Zhibo Zhang, Sani Umar, Ahmed Y. Al Hammadi, Sangyoung Yoon, Ernesto Damiani, Claudio Agostino Ardagna, Nicola Bena, Chan Yeob Yeun

“…And the codes of this paper are publicly available on GitHub.…”
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An inventory of human light exposure behaviour by Mushfiqul Anwar Siraji, Rafael Robert Lazar, Juliëtte van Duijnhoven, Luc J. M. Schlangen, Shamsul Haque, Vineetha Kalavally, Céline Vetter, Gena L. Glickman, Karin C. H. J. Smolders, Manuel Spitschan

“…Instrument webpage: https://leba-instrument.org/ GitHub repository containing this manuscript: https://github.com/leba-instrument/leba-manuscript .…”
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Similarity Downselection: Finding the <i>n</i> Most Dissimilar Molecular Conformers for Reference-Free Metabolomics by Felicity F. Nielson, Bill Kay, Stephen J. Young, Sean M. Colby, Ryan S. Renslow, Thomas O. Metz

“…We present an open-source software called similarity downselection (SDS), written in Python and freely available on GitHub. SDS implements a heuristic algorithm for quickly finding the approximate set(s) of the <i>n</i> most dissimilar items. …”
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GIFT-Grab: Real-time C++ and Python multi-channel video capture, processing and encoding API by Dzhoshkun Ismail Shakir, Luis Carlos García-Peraza-Herrera, Pankaj Daga, Tom Doel, Matthew J. Clarkson, Sébastien Ourselin, Tom Vercauteren

“…GIFT-Grab is hosted and managed on the software repository of the Centre for Medical Image Computing (CMIC) at University College London, and is also mirrored on GitHub. In addition it is available for installation from the Python Package Index (PyPI) via the pip installation tool. …”
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COVID-19Base v3: Update of the knowledgebase for drugs and biomedical entities linked to COVID-19 by Syed Abdullah Basit, Rizwan Qureshi, Saleh Musleh, Reto Guler, Reto Guler, Reto Guler, M. Sohel Rahman, Kabir H. Biswas, Tanvir Alam

“…COVID-19Base v3 can be accessed from: https://covidbase-v3.vercel.app/. The GitHub repository for the source code and data dictionaries is available to the community from: https://github.com/91Abdullah/covidbasev3.0.…”
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Exploring novel disease-disease associations based on multi-view fusion network by Xiaoxi Yang, Wenjian Xu, Dongjin Leng, Yuqi Wen, Lianlian Wu, Ruijiang Li, Jian Huang, Xiaochen Bo, Song He

“…Availability of data and materials: The preprocessed dataset and source code supporting the conclusions of this article are available at GitHub repository https://github.com/yangxiaoxi89/mvHDN.…”
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Identification of Drug Targets and Their Inhibitors in <i>Yersinia pestis</i> Strain 91001 through Subtractive Genomics, Machine Learning, and MD Simulation Approaches by Hamid Ali, Abdus Samad, Amar Ajmal, Amjad Ali, Ijaz Ali, Muhammad Danial, Masroor Kamal, Midrar Ullah, Riaz Ullah, Muhammad Kalim

“…The dataset and the source codes are freely available on GitHub.…”
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DISCo-microbe: design of an identifiable synthetic community of microbes by Dana L. Carper, Travis J. Lawrence, Alyssa A. Carrell, Dale A. Pelletier, David J. Weston

“…The software and data are freely available from GitHub (https://github.com/dlcarper/DISCo-microbe) and Python Package Index (PYPI).…”
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PlantTribes2: Tools for comparative gene family analysis in plant genomics by Eric K. Wafula, Huiting Zhang, Huiting Zhang, Gregory Von Kuster, James H. Leebens-Mack, Loren A. Honaas, Claude W. dePamphilis, Claude W. dePamphilis

“…PlantTribes2 is freely available for use within the main public Galaxy instance and can be downloaded from GitHub or Bioconda. Importantly, PlantTribes2 can be readily adapted for use with genomic and transcriptomic data from any kind of organism.…”
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A Novel QoS Prediction Model for Web Services Based on an Adaptive Neuro-Fuzzy Inference System Using COOT Optimization by Thandra Jithendra, Mohammad Zubair Khan, S. Sharief Basha, Raja Das, A. Divya, Chiranji Lal Chowdhary, Abdulrahman Alahmadi, Ahmed H. Alahmadi

“…In this instance, the quality of the web service (QWS) dataset was obtained from the GitHub database, which consists of 120 web services data, and then evaluated using the presented model on the dataset for estimating response time and throughput of web services. …”
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Pharmacological management of acute spinal cord injury: a longitudinal multi-cohort observational study by Catherine R. Jutzeler, Lucie Bourguignon, Bobo Tong, Elias Ronca, Eric Bailey, Noam Y. Harel, Fred Geisler, Adam R. Ferguson, Brian K. Kwon, Jacquelyn J. Cragg, Lukas Grassner, John L. K. Kramer

“…All results can be interactively explored on the R X SCI web site ( https://jutzelec.shinyapps.io/RxSCI/ ) and GitHub repository ( https://github.com/jutzca/Acute-Pharmacological-Treatment-in-SCI/ ).…”
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DeepBindPoc: a deep learning method to rank ligand binding pockets using molecular vector representation by Haiping Zhang, Konda Mani Saravanan, Jinzhi Lin, Linbu Liao, Justin Tze-Yang Ng, Jiaxiu Zhou, Yanjie Wei

“…The DeepBindPoc model described in this article is available at GitHub (https://github.com/haiping1010/DeepBindPoc) and the webserver is available at (http://cbblab.siat.ac.cn/DeepBindPoc/index.php).…”
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PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data by Xiaojun Hu, Oscar P. Hurtado-Gonzales, Bishwo N. Adhikari, Ronald D. French-Monar, Martha Malapi, Joseph A. Foster, Clint D. McFarland

“…It is publicly available on GitHub at https://github.com/healthyPlant/PhytoPipe and on Docker Hub at https://hub.docker.com/r/healthyplant/phytopipe .…”
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The First Two Years of FLEET: An Active Search for Superluminous Supernovae by Sebastian Gomez, Edo Berger, Peter K. Blanchard, Griffin Hosseinzadeh, Matt Nicholl, Daichi Hiramatsu, V. Ashley Villar, Yao Yin

“…We provide FLEET as an open source package on GitHub:  https://github.com/gmzsebastian/FLEET .…”
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Identifying SARS-CoV-2 infected cells with scVDN by Huan Hu, Huan Hu, Huan Hu, Zhen Feng, Xinghao Steven Shuai, Jie Lyu, Xiang Li, Hai Lin, Jianwei Shuai, Jianwei Shuai, Jianwei Shuai

“…The scVDN framework can be applied to other single-cell virus-related studies, and we make all source code and datasets publicly available on GitHub at https://github.com/studentiz/scvdn.…”
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Closing the Wearable Gap-Part VII: A Retrospective of Stretch Sensor Tool Kit Development for Benchmark Testing by Purva Talegaonkar, David Saucier, Will Carroll, Preston Peranich, Erin Parker, Carver Middleton, Samaneh Davarzani, Alana Turner, Karen Persons, Landon Casey, Reuben F. Burch V, John E. Ball, Harish Chander, Adam Knight, Tony Luczak, Brian K. Smith, R. K. Prabhu

“…With the aid of SSTK defined in this study summary and shared with the academic community on GitHub, researchers will be able to undergo more rigorous validation methodologies of SRS validation. …”
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An Image Analysis Pipeline for Quantifying the Features of Fluorescently-Labeled Biomolecular Condensates in Cells by David W. Baggett, Anna Medyukhina, Swarnendu Tripathi, Hazheen K. Shirnekhi, Huiyun Wu, Stanley B. Pounds, Khaled Khairy, Richard Kriwacki, Richard Kriwacki

“…The source code, analysis notebooks, and test data for the Punctatools pipeline are available on GitHub: https://github.com/stjude/punctatools. Here, we provide a protocol for applying our Punctatools pipeline to extract puncta features from fluorescence microscopy images of cells.…”
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Coregistered histology sections with diffusion tensor imaging data at 200 µm resolution in meningioma tumors by Jan Brabec, Elisabet Englund, Johan Bengzon, Filip Szczepankiewicz, Danielle van Westen, Pia C. Sundgren, Markus Nilsson

“…The raw, processed, and coregistered data are hosted by Analytic Imaging Diagnostics Arena (AIDA) data hub registry, and software tools for processing are provided via GitHub. We hope that data can be used in research and education concerning the link between the meningioma microstructure and parameters obtained by DTI.…”
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Functional annotation map of natural compounds in traditional Chinese medicines library: TCMs with myocardial protection as a case by Xudong Xing, Mengru Sun, Zifan Guo, Yongjuan Zhao, Yuru Cai, Ping Zhou, Huiying Wang, Wen Gao, Ping Li, Hua Yang

“…All computations are done through Python and are publicly available on GitHub.…”
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Factors associated with COVID-19 brought-in deaths: A data-linkage comparative cross-sectional study by Ameerah Su’ad Abdul Shakor, Ely Zarina Samsudin, Xin Wee Chen, Muhammad Haikal Ghazali

“…Data linkage was used to connect three open-source databases—GitHub-MOH, Socioeconomic Data and Applications Center, and OpenStreetMap—and identify health infrastructure and geospatial factors. …”
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