An original template solution for FAIR scientific text mining by Niels A. Zondervan, Frazen Tolentino-Zondervan

“…The main advantages of our method are: (1) Its suitability for both research and educational purposes, (2) Compliance with the Findable Accessible Interoperable and Reproducible (FAIR) principles, and (3) Code and example data are made available on GitHub under the open-source Apache V2 license.…”
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resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes. by A Bradley Duthie, Rosie Mangan, C Rose McKeon, Matthew C Tinsley, Luc F Bussière

“…All source code and documentation are available on GitHub.…”
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Source File Tracking Localization: A Fault Localization Method for Deep Learning Frameworks by Zhenshu Ma, Bo Yang, Yuhang Zhang

“…We screened 3410 crash reports on GitHub and conducted fault location experiments based on those reports. …”
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Sparsity-inducing optimal control via differential dynamic programming by Dinev, T, Merkt, W, Ivan, V, Havoutis, I, Vijayakumar, S

“…We provide an implementation of our method and all examples for reproducibility on GitHub. …”

Epidemiological agent-based modelling software (Epiabm) by Gallagher, K, Bouros, I, Fan, N, Hayman, E, Heirene, L, Lamirande, P, Lemenuel-Diot, A, Lambert, B, Gavaghan, D, Creswell, R

“…Epiabm is publicly available through GitHub at github.com/SABS-R3-Epidemiology/epiabm.…”

SCHISTOX: An individual based model for the epidemiology and control of schistosomiasis by Graham, M, Ayabina, D, Lucas, TC, Collyer, BS, Medley, GF, Hollingsworth, TD, Toor, J

“…We also discuss the development of SCHISTOX in the form of a publicly available open-source GitHub repository. The next key development stage involves validating the model by calibrating to epidemiological data. …”

Learning of weighted multi-layer networks via dynamic social spaces, with application to financial interbank transactions by Carmona, CU, Martinez-Jaramillo, S

“…We develop an efficient MCMC algorithm targeting the posterior distribution of model parameters and missing data (available in GitHub). The motivation for our model lies in the context of Financial Networks, specifically the analysis of transactions between commercial banks. …”

ascatNgs: Identifying somatically acquired copy-number alterations from whole-genome sequencing data by Raine, K, Van Loo, P, Wedge, D, Jones, D, Menzies, A, Butler, A, Teague, J, Tarpey, P, Nik-Zainal, S, Campbell, P

“…Our code is available on our GitHub site (https://github.com/cancerit). This unit describes both ‘one‐shot’ execution and approaches more suitable for large‐scale compute farms. …”

MatMouse: A Mouse Movements Tracking and Analysis Toolbox for Visual Search Experiments by Vassilios Krassanakis, Anastasios L. Kesidis

“…MatMouse is freely distributed to the scientific community under the third version of GNU General Public License (GPL v3) on GitHub platform.…”
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Real-Time LIDAR-Based Urban Road and Sidewalk Detection for Autonomous Vehicles by Ernő Horváth, Claudiu Pozna, Miklós Unger

“…The data and the source code to reproduce the results are shared publicly on our GitHub repository.…”
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APLICATIVO GAMMA-GUI: UMA INTERFACE GRÁFICA AMIGÁVEL PARA PLANEJAMENTO DE EXPERIMENTOS NO MATLAB by Diego Galvan, Evandro Bona

“…The interface of the GAMMA app - Grupo de Análise Multivariada em Matrizes Alimentares, in Portuguese-BR, is available for free download on GitHub https://github.com/appGAMMA, and has a YouTube channel https://www.youtube.com/@appGAMMA with a series of tutorial videos. …”
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Approach to Formalizing Software Projects for Solving Design Automation and Project Management Tasks by Aleksey Filippov, Anton Romanov, Anton Skalkin, Julia Stroeva, Nadezhda Yarushkina

“…GitHub and GitLab contain many project repositories. …”
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ChillsDB: A Gold Standard for Aesthetic Chills Stimuli by Felix Schoeller, Abhinandan Jain, Adam Haar Horowitz, Grace Yan, Xiaoxiao Hu, Pattie Maes, Roy Salomon

“…All ChillsDB tools and data are fully available on GitHub for researchers to be able to contribute and perform further analysis.…”
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UBathy (v2.0): A Software to Obtain the Bathymetry from Video Imagery by Gonzalo Simarro, Daniel Calvete

“…The software and an application example are available on the GitHub platform.…”
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Parsing of Research Documents into XML Using Formal Grammars by Opeoluwa Iwashokun, Abejide Ade-Ibijola

“…The tool and test data are accessible on GitHub repo. The novelty of our process is specific to applying formal techniques for information extraction in structured multipaged documents and academic research documents thus advancing the research in automatic information extraction.…”
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Knowledge Distribution in German Drama by Melanie Andresen, Benjamin Krautter, Janis Pagel, Nils Reiter

“…The dataset is available on GitHub and Zenodo and can be reused, for example, for systematic studies of knowledge in plays or for analyzing disagreements between annotators.…”
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Regressing Image Sub-Population Distributions with Deep Learning by Magdeleine Airiau, Adrien Chan-Hon-Tong, Robin W. Devillers, Guy Le Besnerais

“…The code is released in the GitHub archive at achanhon/AdversarialModel/tree/master/proportion.…”
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KG4Py: A toolkit for generating Python knowledge graph and code semantic search by Lu Liang, Yong Li, Ming Wen, Ying Liu

“…In this paper, we present a toolkit (KG4Py) for generating a knowledge graph of Python files in GitHub repositories and conducting semantic search with the knowledge graph. …”
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Q-Facies: A tool for the quantitative interpretation of groundwater hydrochemical facies by Miguel González Jiménez, Héctor Aguilera, Luis Moreno Merino, Amalia Romero Prados

“…The software relies on standard Python libraries, and is available as a GitHub repository.…”
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iSUMOK-PseAAC: prediction of lysine sumoylation sites using statistical moments and Chou’s PseAAC by Yaser Daanial Khan, Nabeel Sabir Khan, Sheraz Naseer, Ahmad Hassan Butt

“…The codes for the current study are available on the GitHub repository using the link: https://github.com/csbioinfopk/iSumoK-PseAAC.…”
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