Genome-Wide Identification of Cotton (<i>Gossypium</i> spp.) Glycerol-3-Phosphate Dehydrogenase (GPDH) Family Members and the Role of <i>GhGPDH5</i> in Response to Drought Stress by Jialiang Sun, Hua Cui, Bingjie Wu, Weipeng Wang, Qiuyue Yang, Yaxin Zhang, Song Yang, Yuping Zhao, Dongbei Xu, Guoxiang Liu, Tengfei Qin

“…Here, we identified 6, 7, 14 and 14 GPDH genes derived from <i>Gossypium arboreum</i>, <i>Gossypium raimondii</i>, <i>Gossypium barbadense</i> and <i>Gossypium hirsutum</i>, respectively. …”
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Genome-Wide Identification and Expression Analysis Unveil the Involvement of the Cold Shock Protein (CSP) Gene Family in Cotton Hypothermia Stress by Yejun Yang, Ting Zhou, Jianglin Xu, Yongqiang Wang, Yuanchun Pu, Yunfang Qu, Guoqing Sun

“…A total of 62 CSP proteins were identified across four cotton varieties (<i>Gossypium arboreum</i>, <i>Gossypium raimondii</i>, <i>Gossypium barbadense</i>, <i>Gossypium hirsutum</i>) and five plant varieties (<i>Arabidopsis thaliana</i>, <i>Brassica chinensis</i>, <i>Camellia sinensis</i>, <i>Triticum aestivum</i>, and <i>Oryza sativa</i>). …”
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Genome-Wide Identification and Evolutionary Analysis of <i>Gossypium</i> YTH Domain-Containing RNA-Binding Protein Family and the Role of GhYTH8 in Response to Drought Stress by Wei Hao, Weipeng Wang, Xiangfen Xiao, Jialiang Sun, Bingjie Wu, Yuping Zhao, Shuaishuai Pei, Wenjia Fan, Dongbei Xu, Tengfei Qin

“…In this study, a total of 10, 11, 22, and 21 <i>YTH</i> genes were identified in <i>Gossypium arboreum</i>, <i>Gossypium raimondii</i>, <i>Gossypium barbadense</i>, and <i>Gossypium hirsutum</i>, respectively. …”
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Receptor-like Kinases (LRR-RLKs) in Response of Plants to Biotic and Abiotic Stresses by Aigerim Soltabayeva, Nurbanu Dauletova, Symbat Serik, Margulan Sandybek, John Okoth Omondi, Assylay Kurmanbayeva, Sudhakar Srivastava

“…This has been mostly studied in the model plant, <i>Arabidopsis thaliana</i>, and to some extent in other plants, such as <i>Solanum lycopersicum</i>, <i>Nicotiana benthamiana</i>, <i>Brassica napus</i>, <i>Oryza sativa</i>, <i>Triticum aestivum</i>, <i>Hordeum vulgare</i>, <i>Brachypodium distachyon</i>, <i>Medicago truncatula</i>, <i>Gossypium barbadense</i>, <i>Phaseolus vulgaris</i>, <i>Solanum tuberosum</i>, and <i>Malus robusta</i>. …”
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Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress by Nasreen Bano, Nasreen Bano, Shafquat Fakhrah, Chandra Sekhar Mohanty, Chandra Sekhar Mohanty, Sumit Kumar Bag, Sumit Kumar Bag

“…Here, we systematically identified 105 TLP gene family members in cotton (Gossypium arboreum, Gossypium raimondii, Gossypium hirsutum, and Gossypium barbadense) genomes and classified them into eight phylogenetic groups. …”
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Genome-wide identification and expression analysis of the HD2 protein family and its response to drought and salt stress in Gossypium species by Nasreen Bano, Nasreen Bano, Shafquat Fakhrah, Shafquat Fakhrah, Rayees Ahmad Lone, Rayees Ahmad Lone, Chandra Sekhar Mohanty, Chandra Sekhar Mohanty, Sumit Kumar Bag, Sumit Kumar Bag

“…In this study, a total of 27 HD2 members were identified, using Hidden Markov model profiles, in two diploid cotton genomes (Gossypium raimondii and Gossypium arboretum) and two tetraploid cotton genomes (Gossypium hirsutum and Gossypium barbadense). These cotton HD2 members were classified into 10 major phylogenetic groups (I-X), of which group III was found to be the largest with 13 cotton HD2 members. …”
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Genome-wide identification of the geranylgeranyl pyrophosphate synthase (GGPS) gene family involved in chlorophyll synthesis in cotton by Wenxiang Feng, Teame Gereziher Mehari, Hui Fang, Meijun Ji, Zijian Qu, Mengxue Jia, Dongmei Wang, Allah Ditta, Muhammad K. R. Khan, Yunying Cao, Jianyong Wu, Baohua Wang

“…Results In the current research, genome-wide identification was performed, and a total of 75 GGPS family members were found in four cotton species, Gossypium hirsutum, Gossypium barbadense, Gossypium arboreum and Gossypium raimondii. …”
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Revealing the contribution of GbPR10.5D1 to resistance against Verticillium dahliae and its regulation for structural defense and immune signaling by Jin Guo, Peihua Cao, Leitian Yuan, Guixian Xia, Huanyang Zhang, Jing Li, Fuxin Wang

“…In the present study, we analyzed the phylogenetic relationship and function of a novel PR10 named GbPR10.5D1 in Sea‐Island (or Pima or Egyptian) cotton (Gossypium barbadense L.), which has been identified as a Verticillium dahliae Kleb.…”
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Genome-Wide Identification of Cotton (<i>Gossypium</i> spp.) Trehalose-6-Phosphate Phosphatase (TPP) Gene Family Members and the Role of <i>GhTPP22</i> in the Response to Drought S... by Weipeng Wang, Hua Cui, Xiangfen Xiao, Bingjie Wu, Jialiang Sun, Yaxin Zhang, Qiuyue Yang, Yuping Zhao, Guoxiang Liu, Tengfei Qin

“…In this study, 17, 12, 26 and 24 TPP family genes were identified in <i>Gossypium arboreum</i>, <i>Gossypium raimondii</i>, <i>Gossypium barbadense</i> and <i>Gossypium hirsutum</i>, respectively. …”
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Genome-Wide Investigation and Co-Expression Network Analysis of SBT Family Gene in <i>Gossypium</i> by Tianxi Xue, Lisen Liu, Xinyi Zhang, Zhongqiu Li, Minghao Sheng, Xiaoyang Ge, Wenying Xu, Zhen Su

“…In this study, 146 <i>Gossypium hirsutum</i>, 138 <i>Gossypium barbadense</i>, 89 <i>Gossypium arboreum</i> and 84 <i>Gossypium raimondii</i> SBTs were identified and divided into six subfamilies. …”
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Cotton pan-genome retrieves the lost sequences and genes during domestication and selection by Jianying Li, Daojun Yuan, Pengcheng Wang, Qiongqiong Wang, Mengling Sun, Zhenping Liu, Huan Si, Zhongping Xu, Yizan Ma, Boyang Zhang, Liuling Pei, Lili Tu, Longfu Zhu, Ling-Ling Chen, Keith Lindsey, Xianlong Zhang, Shuangxia Jin, Maojun Wang

“…Using pan-genome analyses, we identify 32,569 and 8851 non-reference genes lost from Gossypium hirsutum and Gossypium barbadense reference genomes respectively, of which 38.2% (39,278) and 14.2% (11,359) of genes exhibit presence/absence variation (PAV). …”
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Lignin and cellulose content differences in roots of different cotton cultivars associated with different levels of Fusarium wilt race 4 (FOV4) resistance-response by Lavanya Mendu, Mauricio Ulloa, Paxton Payton, Cecilia Monclova-Santana, Jennifer Chagoya, Venugopal Mendu

“…The present study focused on examining the variation in lignin and cellulose contents in root tissue of Pima (Gossypium barbadense L.) and Upland (G. hirsutum L.) cotton with different levels of FOV4 wilt resistance-response. …”
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Comparative Transcriptome Analysis Revealed Key Genes Regulating Gossypol Synthesis in Tetraploid Cultivated Cotton by Linglei Kong, Shaoqi Li, Yuyuan Qian, Hailiang Cheng, Youping Zhang, Dongyun Zuo, Limin Lv, Qiaolian Wang, Junlan Li, Guoli Song

“…We performed a comprehensive transcriptome analysis of four glanded versus two glandless tetraploid cultivars distributed in <i>Gossypium hirsutum</i> and <i>Gossypium barbadense</i>. A weighted gene co-expression network analysis (WGCNA) based on 431 common differentially expressed genes (DEGs) uncovered a candidate module that was strongly associated with the reduction in or disappearance of gossypol and pigment glands. …”
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Casparian strip membrane domain proteins in Gossypium arboreum: genome-wide identification and negative regulation of lateral root growth by Xiaoyang Wang, Yuanming Zhang, Liyuan Wang, Zhaoe Pan, Shoupu He, Qiong Gao, Baojun Chen, Wenfang Gong, Xiongming Du

“…Results To investigate the function of CASPs in cotton, we identified and characterized 48, 54, 91 and 94 CASPs from Gossypium arboreum, Gossypium raimondii, Gossypium barbadense and Gossypium hirsutum, respectively, at the genome-wide level. …”
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Exp2 polymorphisms associated with variation for fiber quality properties in cotton (Gossypium spp.) by Daohua He, Zhongping Lei, Hongyi Xing, Baoshan Tang, Junxing Zhao, Bixia Lu

“…By amplicon sequencing, the nucleotide diversity of Exp2 was investigated across 92 accessions (including 7 Gossypium arboreum, 74 Gossypium hirsutum, and 11 Gossypium barbadense accessions) with different fiber qualities. …”
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Characterization of WOX genes revealed drought tolerance, callus induction, and tissue regeneration in Gossypium hirsutum by Sani Muhammad Tajo, Sani Muhammad Tajo, Zhaoe Pan, Shoupu He, Baojun Chen, Yusuf KM, Tahir Mahmood, Salisu Bello Sadau, Muhammad Shahid Iqbal, Teame Gereziher, Umar Suleiman Abubakar, Masha Joseph, Tajo Sammani, Xiaoli Geng, Xiongming Du

“…This study identified 39, 40, 21, and 20 WOX genes in Gossypium hirsutum, Gossypium barbadense, Gossypium arboreum, and Gossypium raimondii, respectively. …”
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An overview of salinity stress, mechanism of salinity tolerance and strategies for its management in cotton by Zahra Maryum, Tahira Luqman, Sahar Nadeem, Sana Muhy Ud Din Khan, Baohua Wang, Allah Ditta, Allah Ditta, Muhammad Kashif Riaz Khan, Muhammad Kashif Riaz Khan

“…Among the cultivated species of cotton, Egyptian cotton (Gossypium barbadense L.) exhibit better salt tolerance with good fiber quality traits as compared to most cultivated cotton and it can be used to improve five quality traits and transfer salt tolerance into Upland or American cotton (Gossypium hirsutum L.) by interspecific introgression. …”
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QTL Analysis of Transgressive Nematode Resistance in Tetraploid Cotton Reveals Complex Interactions in Chromosome 11 Regions by Congli Wang, Congli Wang, Mauricio Ulloa, Tra T. Duong, Philip A. Roberts

“…Our previous studies reported transgressive RKN resistance in an intraspecific Gossypium hirsutum resistant NemX × susceptible SJ-2 recombinant inbred line (RIL) population and early generations of interspecific cross Gossypium barbadense (susceptible Pima S-7) × G. hirsutum (NemX). …”
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Subgenome Bias and Temporal Postponement of Gene Expression Contributes to the Distinctions of Fiber Quality in Gossypium Species by Huan Mei, Bowen Qi, Zegang Han, Ting Zhao, Menglan Guo, Jin Han, Juncheng Zhang, Xueying Guan, Xueying Guan, Yan Hu, Yan Hu, Tianzhen Zhang, Tianzhen Zhang, Lei Fang, Lei Fang

“…As two cultivated widely allotetraploid cotton species, although Gossypium hirsutum and Gossypium barbadense evolved from the same ancestor, they differ in fiber quality; the molecular mechanism of that difference should be deeply studied. …”
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HyPRP1 performs a role in negatively regulating cotton resistance to V. dahliae via the thickening of cell walls and ROS accumulation by Jun Yang, Yan Zhang, Xingfen Wang, Weiqiao Wang, Zhikun Li, Jinhua Wu, Guoning Wang, Liqiang Wu, Guiyin Zhang, Zhiying Ma

“…Results Here, we identified the gene GbHyPRP1 in Gossypium barbadense, which encodes a protein containing both proline-rich repetitive and Pollen Ole e I domains. …”
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