Integrated application of emerging and traditional technologies for development : report of the ad hoc panel of the advisory committee on science and technology for development, Ma... by International Rice Research Institute

Revisiting rice breeding methods – evaluating the use of rapid generation advance (RGA) for routine rice breeding by Bertrand C. Y. Collard, Joseph C. Beredo, Bert Lenaerts, Rhulyx Mendoza, Ronald Santelices, Vitaliano Lopena, Holden Verdeprado, Chitra Raghavan, Glenn B. Gregorio, Leigh Vial, Matty Demont, Partha S. Biswas, Khandakar M. Iftekharuddaula, Mohammad Akhlasur Rahman, Joshua N. Cobb, Mohammad Rafiqul Islam

“…We describe preliminary activities at the International Rice Research Institute (IRRI) to re-establish RGA on a large scale as the main breeding method for irrigated rice breeding. …”
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Identification of an Elite Core Panel as a Key Breeding Resource to Accelerate the Rate of Genetic Improvement for Irrigated Rice by Roselyne U. Juma, Jérôme Bartholomé, Parthiban Thathapalli Prakash, Waseem Hussain, John D. Platten, Vitaliano Lopena, Holden Verdeprado, Rosemary Murori, Alexis Ndayiragije, Sanjay Kumar Katiyar, Md Rafiqul Islam, Partha S. Biswas, Jessica E. Rutkoski, Juan D. Arbelaez, Felister N. Mbute, Douglas W. Miano, Joshua N. Cobb

“…In this effort, the International Rice Research Institute (IRRI) continues to play a critical role in creating and disseminating rice varieties with higher productivity. …”
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Superior haplotypes of key drought-responsive genes reveal opportunities for the development of climate-resilient rice varieties by Preeti Singh, Krishna T. Sundaram, Vishnu Prasanth Vinukonda, Challa Venkateshwarlu, Pronob J. Paul, Bandana Pahi, Anoop Gurjar, Uma Maheshwar Singh, Sanjay Kalia, Arvind Kumar, Vikas K. Singh, Pallavi Sinha

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Food Processing Technologies to Develop Functional Foods With Enriched Bioactive Phenolic Compounds in Cereals by Deepak Kasote, Rhowell N. Tiozon, Rhowell N. Tiozon, Kristel June D. Sartagoda, Hameeda Itagi, Priyabrata Roy, Ajay Kohli, Ahmed Regina, Nese Sreenivasulu, Nese Sreenivasulu

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Natural Diversity in Stomatal Features of Cultivated and Wild Oryza Species by Jolly Chatterjee, Vivek Thakur, Robert Nepomuceno, Robert A. Coe, Jacqueline Dionora, Abigail Elmido-Mabilangan, Abraham Darius Llave, Anna Mae Delos Reyes, Apollo Neil Monroy, Irma Canicosa, Anindya Bandyopadhyay, Kshirod K. Jena, Darshan S. Brar, William Paul Quick

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SNP-Seek II: A resource for allele mining and analysis of big genomic data in Oryza sativa by Locedie Mansueto, Roven Rommel Fuentes, Dmytro Chebotarov, Frances Nikki Borja, Jeffrey Detras, Juan Miguel Abriol-Santos, Kevin Palis, Alexandre Poliakov, Inna Dubchak, Victor Solovyev, Ruaraidh Sackville Hamilton, Kenneth L. McNally, Nickolai Alexandrov, Ramil Mauleon

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Drought Resistance Improvement in Rice: An Integrated Genetic and Resource Management Strategy by Rachid Serraj, Kenneth L. McNally, Inez Slamet-Loedin, Ajay Kohli, Stephan M. Haefele, Gary Atlin, Arvind Kumar

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Why Technologies Often Fail to Scale: Policy and Market Failures behind Limited Scaling of Alternate Wetting and Drying in Rice in Bangladesh by Sushil Pandey, Sudhir Yadav, Jon Hellin, Jean Balié, Humnath Bhandari, Arvind Kumar, Manoranjan K. Mondal

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Characterization of the Leaf Microbiome from Whole-Genome Sequencing Data of the 3000 Rice Genomes Project by Veronica Roman-Reyna, Dale Pinili, Frances N. Borja, Ian L. Quibod, Simon C. Groen, Nickolai Alexandrov, Ramil Mauleon, Ricardo Oliva

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Marker‐assisted forward breeding to develop a drought‐, bacterial‐leaf‐blight‐, and blast‐resistant rice cultivar by Uma Maheshwar Singh, Shilpi Dixit, Shamshad Alam, Shailesh Yadav, Vinukonda Vishnu Prasanth, Arun Kumar Singh, Challa Venkateshwarlu, Ragavendran Abbai, Abhilash Kumar Vipparla, Jyothi Badri, Tilatoo Ram, Madamshetty Srinivas Prasad, Gouri Sankar Laha, Vikas Kumar Singh, Arvind Kumar

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Codon Usage Provide Insights into the Adaptation of Rice Genes under Stress Condition by Swati Tyagi, Pramod Gorakhanath Kabade, Niranjani Gnanapragasam, Uma Maheshwar Singh, Anoop Kishor Singh Gurjar, Ashutosh Rai, Pallavi Sinha, Arvind Kumar, Vikas Kumar Singh

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An assessment of irrigated rice cultivation with different crop establishment practices in Vietnam by Van-Hung Nguyen, Alexander M. Stuart, Thi-My-Phung Nguyen, Thi-Minh-Hieu Pham, Ngoc-Phuong-Thanh Nguyen, Anny Ruth P. Pame, Bjoern Ole Sander, Martin Gummert, Grant Robert Singleton

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Multi-environment Genomic Selection in Rice Elite Breeding Lines by Van Hieu Nguyen, Rose Imee Zhella Morantte, Vitaliano Lopena, Holden Verdeprado, Rosemary Murori, Alexis Ndayiragije, Sanjay Kumar Katiyar, Md Rafiqul Islam, Roselyne Uside Juma, Hayde Flandez-Galvez, Jean-Christophe Glaszmann, Joshua N. Cobb, Jérôme Bartholomé

“…We used 111 elite breeding lines representing the diversity of the international rice research institute breeding program for irrigated ecosystems. …”
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Proof of concept and early development stage of market-oriented high iron and zinc rice expressing dicot ferritin and rice nicotianamine synthase genes by Nikolaos Tsakirpaloglou, Gela Myan Bueno-Mota, Jessica Candace Soriano, Erwin Arcillas, Felichi Mae Arines, Su-May Yu, James Stangoulis, Kurniawan Rudi Trijatmiko, Russell Reinke, Joseph Tohme, Howarth Bouis, Inez H. Slamet-Loedin

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Candidate regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice by Peng Wang, Shanta Karki, Akshaya K. Biswal, Hsiang-Chun Lin, Mary Jacqueline Dionora, Govinda Rizal, Xiaojia Yin, Mara L. Schuler, Tom Hughes, Jim P. Fouracre, Basel Abu Jamous, Olga Sedelnikova, Shuen-Fang Lo, Anindya Bandyopadhyay, Su-May Yu, Steven Kelly, W. Paul Quick, Jane A. Langdale

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Novel Sources of Pre-Harvest Sprouting Resistance for Japonica Rice Improvement by Jae-Sung Lee, Dmytro Chebotarov, Kenneth L. McNally, Valerien Pede, Tri Deri Setiyono, Rency Raquid, Woong-Jo Hyun, Ji-Ung Jeung, Ajay Kohli, Youngjun Mo

“…Here, we present promising rice germplasm with strong resistance to PHS that were selected from a diverse rice panel of accessions held in the International Rice Genebank (IRG) at the International Rice Research Institute (IRRI). To induce PHS, three panicle samples per accession were harvested at 20 and 30 days after flowering (DAF), respectively, and incubated at 100% relative humidity (RH), 30 °C in a growth chamber for 15 days. …”
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Molecular Mapping of QTLs Associated with Lodging Resistance in Dry Direct-Seeded Rice (Oryza sativa L.) by Shailesh Yadav, Shailesh Yadav, Uma M. Singh, Shilpa M. Naik, Challa Venkateshwarlu, Perumalla J. Ramayya, K. Anitha Raman, Nitika Sandhu, Arvind Kumar, Arvind Kumar

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Development of a phenotyping protocol for combined drought and salinity stress at seedling stage in rice by Suneetha Kota, Suneetha Kota, Naireen Aiza Vispo, Marinell R. Quintana, Carlo L. U. Cabral, C. Arloo Centeno, James Egdane, Frans J. M. Maathuis, Ajay Kohli, Amelia Henry, Rakesh Kumar Singh

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Development of a genome-wide InDel marker set for allele discrimination between rice (Oryza sativa) and the other seven AA-genome Oryza species by Sherry Lou Hechanova, Kamal Bhattarai, Eliza Vie Simon, Graciana Clave, Pathmasiri Karunarathne, Eok-Keun Ahn, Charng-Pei Li, Jeom-Sig Lee, Ajay Kohli, N. Ruaraidh Sackville Hamilton, Jose E. Hernandez, Glenn B. Gregorio, Kshirod K. Jena, Gynheung An, Sung-Ryul Kim

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