Using strain-resolved analysis to identify contamination in metagenomics data by Yue Clare Lou, Jordan Hoff, Matthew R. Olm, Jacob West-Roberts, Spencer Diamond, Brian A. Firek, Michael J. Morowitz, Jillian F. Banfield

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Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism by Luis E. Valentin-Alvarado, Sirine C. Fakra, Alexander J. Probst, Jonathan R. Giska, Alexander L. Jaffe, Luke M. Oltrogge, Jacob West-Roberts, Joel Rowland, Michael Manga, David F. Savage, Chris Greening, Brett J. Baker, Jillian F. Banfield

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The phyllosphere microbiome shifts toward combating melanose pathogen by Pu-Dong Li, Zeng-Rong Zhu, Yunzeng Zhang, Jianping Xu, Hongkai Wang, Zhengyi Wang, Hongye Li

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Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria by Bastian Seelbinder, Jiarui Chen, Sascha Brunke, Ruben Vazquez-Uribe, Rakesh Santhaman, Anne-Christin Meyer, Felipe Senne de Oliveira Lino, Ka-Fai Chan, Daniel Loos, Lejla Imamovic, Chi-Ching Tsang, Rex Pui-kin Lam, Siddharth Sridhar, Kang Kang, Bernhard Hube, Patrick Chiu-yat Woo, Morten Otto Alexander Sommer, Gianni Panagiotou

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Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis by Zhenhua Wu, Shimeng Huang, Tiantian Li, Na Li, Dandan Han, Bing Zhang, Zhenjiang Zech Xu, Shiyi Zhang, Jiaman Pang, Shilan Wang, Guolong Zhang, Jiangchao Zhao, Junjun Wang

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Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA by Yacine Amar, Ilias Lagkouvardos, Rafaela L. Silva, Oluwaseun Ayodeji Ishola, Bärbel U. Foesel, Susanne Kublik, Anne Schöler, Sebastian Niedermeier, Rachela Bleuel, Alexander Zink, Klaus Neuhaus, Michael Schloter, Tilo Biedermann, Martin Köberle

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Xylanase enhances gut microbiota-derived butyrate to exert immune-protective effects in a histone deacetylase-dependent manner by Tong Wang, Nannan Zhou, Feifei Ding, Zhenzhen Hao, Jorge Galindo-Villegas, Zhenyu Du, Xiaoyun Su, Meiling Zhang

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Correction to: Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota by Jane A. Mullaney, Juliette E. Stephens, Mary-Ellen Costello, Cai Fong, Brooke E. Geeling, Patrick G. Gavin, Casey M. Wright, Timothy D. Spector, Matthew A. Brown, Emma E. Hamilton-Williams

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Integrated multi-approaches reveal unique metabolic mechanisms of Vestimentifera to adapt to deep sea by Qinglei Sun, Zihao Yuan, Yuanyuan Sun, Li Sun

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Saturated long-chain fatty acid-producing bacteria contribute to enhanced colonic motility in rats by Ling Zhao, Yufen Huang, Lin Lu, Wei Yang, Tao Huang, Zesi Lin, Chengyuan Lin, Hiuyee Kwan, Hoi Leong Xavier Wong, Yang Chen, Silong Sun, Xuefeng Xie, Xiaodong Fang, Huanming Yang, Jian Wang, Lixin Zhu, Zhaoxiang Bian

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Unveiling bat-borne viruses: a comprehensive classification and analysis of virome evolution by Yuyang Wang, Panpan Xu, Yelin Han, Wenliang Zhao, Lamei Zhao, Rui Li, Junpeng Zhang, Shuyi Zhang, Jian Lu, Peter Daszak, Qi Jin, Zhiqiang Wu

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Metabolic route computation in organism communities by Markus Krummenacker, Mario Latendresse, Peter D Karp

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Antibiotic-modulated microbiome suppresses lethal inflammation and prolongs lifespan in Treg-deficient mice by Baokun He, Yuying Liu, Thomas K. Hoang, Xiangjun Tian, Christopher M. Taylor, Meng Luo, Dat Q. Tran, Nina Tatevian, J. Marc Rhoads

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Vitamin B12 produced by Cetobacterium somerae improves host resistance against pathogen infection through strengthening the interactions within gut microbiota by Xiaozhou Qi, Yong Zhang, Yilin Zhang, Fei Luo, Kaige Song, Gaoxue Wang, Fei Ling

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Surgery-induced gut microbial dysbiosis promotes cognitive impairment via regulation of intestinal function and the metabolite palmitic amide by Cailong Pan, Huiwen Zhang, Lingyuan Zhang, Lu Chen, Lu Xu, Ning Xu, Xue Liu, Qinghai Meng, Xiaoliang Wang, Zhi-Yuan Zhang

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Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line by Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang, Changlong Shu

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Ningxiang pig-derived lactobacillus reuteri modulates host intramuscular fat deposition via branched-chain amino acid metabolism by Mei Yang, Qian Xie, Jing Wang, Andong Zha, Jiashun Chen, Qian Jiang, Meng Kang, Qiuchun Deng, Yulong Yin, Bie Tan

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The unique gut microbiome of giant pandas involved in protein metabolism contributes to the host’s dietary adaption to bamboo by Feilong Deng, Chengdong Wang, Desheng Li, Yunjuan Peng, Linhua Deng, Yunxiang Zhao, Zhihao Zhang, Ming Wei, Kai Wu, Jiangchao Zhao, Ying Li

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Correction to: The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut by Jason W. Arnold, Jeffery Roach, Salvador Fabela, Emily Moorfield, Shengli Ding, Eric Blue, Suzanne Dagher, Scott Magness, Rita Tamayo, Jose M. Bruno-Barcena, M. Andrea Azcarate-Peril

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Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach (ZINQ) by Wodan Ling, Ni Zhao, Anna M. Plantinga, Lenore J. Launer, Anthony A. Fodor, Katie A. Meyer, Michael C. Wu

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