Microbial network inference for longitudinal microbiome studies with LUPINE by Saritha Kodikara, Kim-Anh Lê Cao

“…Microbiome…”
Get full text

Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato by Kelly Brener-Raffalli, Camille Clerissi, Jeremie Vidal-Dupiol, Mehdi Adjeroud, François Bonhomme, Marine Pratlong, Didier Aurelle, Guillaume Mitta, Eve Toulza

“…Microbiome…”
Get full text

CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets by Orges Koci, Richard K. Russell, M. Guftar Shaikh, Christine Edwards, Konstantinos Gerasimidis, Umer Zeeshan Ijaz

“…Microbiome…”
Get full text

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans by Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock

“…Microbiome…”
Get full text

Advancing functional and translational microbiome research using meta-omics approaches by Xu Zhang, Leyuan Li, James Butcher, Alain Stintzi, Daniel Figeys

“…Microbiome…”
Get full text

The intestinal microbiome and Cetobacterium somerae inhibit viral infection through TLR2-type I IFN signaling axis in zebrafish by Hui Liang, Ming Li, Jie Chen, Wenhao Zhou, Dongmei Xia, Qianwen Ding, Yalin Yang, Zhen Zhang, Chao Ran, Zhigang Zhou

“…Microbiome…”
Get full text

Correction to: Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation by Kaela K. Amundson, Mikayla A. Borton, Rebecca A. Daly, David W. Hoyt, Allison Wong, Elizabeth Eder, Joseph Moore, Kenneth Wunch, Kelly C. Wrighton, Michael J. Wilkins

“…Microbiome…”
Get full text

Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles by Anna Kaisanlahti, Jenni Turunen, Nadiya Byts, Anatoliy Samoylenko, Genevieve Bart, Nikke Virtanen, Mysore V. Tejesvi, Artem Zhyvolozhnyi, Sonia Sarfraz, Sohvi Kumpula, Jenni Hekkala, Sonja Salmi, Olga Will, Johanna Korvala, Niko Paalanne, Pande Putu Erawijantari, Marko Suokas, Tuula Peñate Medina, Seppo Vainio, Oula Peñate Medina, Leo Lahti, Terhi Tapiainen, Justus Reunanen

“…Microbiome…”
Get full text

13C-Stable isotope resolved metabolomics uncovers dynamic biochemical landscape of gut microbiome-host organ communications in mice by Xia Xiao, Yixuan Zhou, Xinwei Li, Jing Jin, Jerika Durham, Zifan Ye, Yipeng Wang, Bernhard Hennig, Pan Deng

“…Microbiome…”
Get full text

Gut microbiota-derived metabolites mediate the neuroprotective effect of melatonin in cognitive impairment induced by sleep deprivation by Xintong Wang, Zixu Wang, Jing Cao, Yulan Dong, Yaoxing Chen

“…Microbiome…”
Get full text

CO-driven electron and carbon flux fuels synergistic microbial reductive dechlorination by Jingjing Wang, Xiuying Li, Huijuan Jin, Shujing Yang, Lian Yu, Hongyan Wang, Siqi Huang, Hengyi Liao, Xuhao Wang, Jun Yan, Yi Yang

“…Microbiome…”
Get full text

Lineage-specific symbionts mediate differential coral responses to thermal stress by Chenying Wang, Xinqing Zheng, Hagit Kvitt, Huaxia Sheng, Danye Sun, Gaofeng Niu, Dan Tchernov, Tuo Shi

“…Microbiome…”
Get full text

“Candidatus Paraporphyromonas polyenzymogenes” encodes multi-modular cellulases linked to the type IX secretion system by A. E. Naas, L. M. Solden, A. D. Norbeck, H. Brewer, L. H. Hagen, I. M. Heggenes, A. C. McHardy, R. I. Mackie, L. Paša-Tolić, M. Ø. Arntzen, V. G. H. Eijsink, N. M. Koropatkin, M. Hess, K. C. Wrighton, P. B. Pope

“…Microbiome…”
Get full text

The astounding exhaustiveness and speed of the Astral mass analyzer for highly complex samples is a quantum leap in the functional analysis of microbiomes by Thibaut Dumas, Roxana Martinez Pinna, Clément Lozano, Sonja Radau, Olivier Pible, Lucia Grenga, Jean Armengaud

“…Microbiome…”
Get full text

Characterization of liver, adipose, and fecal microbiome in obese patients with MASLD: links with disease severity and metabolic dysfunction parameters by Katherine J. P. Schwenger, Julia K. Copeland, Yasaman Ghorbani, Lina Chen, Elena M. Comelli, David S. Guttman, Sandra E. Fischer, Timothy D. Jackson, Allan Okrainec, Johane P. Allard

“…Microbiome…”
Get full text

Distinct intestinal microbial signatures linked to accelerated systemic and intestinal biological aging by Shalini Singh, Leila B. Giron, Maliha W. Shaikh, Shivanjali Shankaran, Phillip A. Engen, Zlata R. Bogin, Simona A. Bambi, Aaron R. Goldman, Joao L. L. C. Azevedo, Lorena Orgaz, Nuria de Pedro, Patricia González, Martin Giera, Aswin Verhoeven, Elena Sánchez-López, Ivona Pandrea, Toshitha Kannan, Ceylan E. Tanes, Kyle Bittinger, Alan L. Landay, Michael J. Corley, Ali Keshavarzian, Mohamed Abdel-Mohsen

“…Microbiome…”
Get full text

Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota by Lesley Hoyles, Maria L. Jiménez-Pranteda, Julien Chilloux, Francois Brial, Antonis Myridakis, Thomas Aranias, Christophe Magnan, Glenn R. Gibson, Jeremy D. Sanderson, Jeremy K. Nicholson, Dominique Gauguier, Anne L. McCartney, Marc-Emmanuel Dumas

“…Microbiome…”
Get full text

Estrogen-mediated gut microbiome alterations influence sexual dimorphism in metabolic syndrome in mice by Kanakaraju Kaliannan, Ruairi C. Robertson, Kiera Murphy, Catherine Stanton, Chao Kang, Bin Wang, Lei Hao, Atul K. Bhan, Jing X. Kang

“…Microbiome…”
Get full text

In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaea by Alba Regueira-Iglesias, Lara Vázquez-González, Carlos Balsa-Castro, Nicolás Vila-Blanco, Triana Blanco-Pintos, Javier Tamames, Maria José Carreira, Inmaculada Tomás

“…Microbiome…”
Get full text

No evidence for Wolbachia as a nutritional co-obligate endosymbiont in the aphid Pentalonia nigronervosa by Alejandro Manzano-Marín

“…Microbiome…”
Get full text