Integrative analysis of multi-omics data to detect the underlying molecular mechanisms for obesity in vivo in humans by Qiang Zhang, Xiang-He Meng, Chuan Qiu, Hui Shen, Qi Zhao, Lan-Juan Zhao, Qing Tian, Chang-Qing Sun, Hong-Wen Deng

Subjects: “…Multi-omics integration…”
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Computational Approaches for Integrative Analysis of the Metabolome and Microbiome by Jasmine Chong, Jianguo Xia

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Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization by Weixuan Liu, Thao Vu, Iain R. Konigsberg, Katherine A. Pratte, Yonghua Zhuang, Katerina J. Kechris

Subjects: “…Multi-omics integration…”
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Deep learning-based approaches for multi-omics data integration and analysis by Jenna L. Ballard, Zexuan Wang, Wenrui Li, Li Shen, Qi Long

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Omics Path to Increasing Productivity in Less-Studied Crops Under Changing Climate—Lentil a Case Study by Manish Tiwari, Baljinder Singh, Doohong Min, S. V. Krishna Jagadish

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Integrated single-cell and bulk RNA sequencing analysis identifies a neoadjuvant chemotherapy-related gene signature for predicting survival and therapy in breast cancer by Xiaojun Zhang, Ran Feng, Junbin Guo, Lihui Pan, Yarong Yao, Jinnan Gao

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Integrative Analysis of DNA Methylation and Transcriptome Identifies a Predictive Epigenetic Signature Associated With Immune Infiltration in Gliomas by Jianlei Zhang, Jiang Yin, Liyun Luo, Danqing Huang, Dongfeng Zhai, Ge Wang, Ning Xu, Mingqiang Yang, Ying Song, Guopei Zheng, Qiong Zhang

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Transcriptome and metabolome integration in sugarcane through culm development by Virginie Perlo, Agnelo Furtado, Frederik C. Botha, Gabriel R. A. Margarido, Katrina Hodgson‐Kratky, Hemant Choudhary, John Gladden, Blake Simmons, Robert J. Henry

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Network approaches for omics studies of neurodegenerative diseases by Na Zhao, Zachary Quicksall, Yan W. Asmann, Yingxue Ren

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Integrative Pathway Analysis of SNP and Metabolite Data Using a Hierarchical Structural Component Model by Taeyeong Jung, Youngae Jung, Min Kyong Moon, Oran Kwon, Geum-Sook Hwang, Taesung Park, Taesung Park

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Microbial-transcriptome integrative analysis of heat stress effects on amino acid metabolism and lipid peroxidation in poultry jejunum by Young-Jun Seo, Chiwoong Lim, Byeonghwi Lim, Jun-Mo Kim

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Leveraging Multilayered “Omics” Data for Atopic Dermatitis: A Road Map to Precision Medicine by Debajyoti Ghosh, Jonathan A. Bernstein, Gurjit K. Khurana Hershey, Marc E. Rothenberg, Tesfaye B. Mersha

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Metabolic memory underlying minimal residual disease in breast cancer by Ksenija Radic Shechter, Eleni Kafkia, Katharina Zirngibl, Sylwia Gawrzak, Ashna Alladin, Daniel Machado, Christian Lüchtenborg, Daniel C Sévin, Britta Brügger, Kiran R Patil, Martin Jechlinger

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Functional metabolomics of the human scalp: a metabolic niche for Staphylococcus epidermidis by Louis-Félix Nothias, Robin Schmid, Allison Garlet, Hunter Cameron, Sabrina Leoty-Okombi, Valérie André-Frei, Regine Fuchs, Pieter C. Dorrestein, Philipp Ternes

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Identification of functional gene modules by integrating multi-omics data and known molecular interactions by Xiaoqing Chen, Xiaoqing Chen, Mingfei Han, Yingxing Li, Xiao Li, Jiaqi Zhang, Yunping Zhu, Yunping Zhu

Subjects: “…multi-omics integration…”
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Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community by Zhang, Chengyu, Sánchez, Benjamín J., Li, Feiran, Cheng, Eiden Wei Quan, Scott, William T., Liebal, Ulf W., Blank, Lars M., Mengers, Hendrik G., Anton, Mihail, Rangel, Albert Tafur, Mendoza, Sebastián N., Zhang, Lixin, Nielsen, Jens, Lu, Hongzhong, Kerkhoven, Eduard J.

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Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies by Zheng Wang, Christine P. Zolnik, Christine P. Zolnik, Yunping Qiu, Mykhaylo Usyk, Tao Wang, Howard D. Strickler, Carmen R. Isasi, Robert C. Kaplan, Robert C. Kaplan, Irwin J. Kurland, Qibin Qi, Robert D. Burk, Robert D. Burk, Robert D. Burk, Robert D. Burk

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Two sexually compatible monokaryons from a heterokaryotic Lentinula edodes strain respond differently to heat stress by Yuan Guo, Wenyu Jiao, Yajie Zhang, Meiting Tan, Qi Gao, Yu Liu, Shouxian Wang

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A multimodal graph neural network framework for cancer molecular subtype classification by Bingjun Li, Sheida Nabavi

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eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction by Abdou Rahmane Wade, Harold Duruflé, Leopoldo Sanchez, Vincent Segura

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