Understanding the tumor immune microenvironment (TIME) for effective therapy by Binnewies, Mikhail, Roberts, Edward W., Kersten, Kelly, Chan, Vincent, Fearon, Douglas F., Merad, Miriam, Coussens, Lisa M., Gabrilovich, Dmitry I., Ostrand-Rosenberg, Suzanne, Hedrick, Catherine C., Vonderheide, Robert H., Pittet, Mikael J., Jain, Rakesh K., Zou, Weiping, Howcroft, T. Kevin, Woodhouse, Elisa C., Krummel, Matthew F., Weinberg, Robert A

“…It has been possible to identify different subclasses of immune environment that have an influence on tumor initiation and response and therapy; by parsing the unique classes and subclasses of tumor immune microenvironment (TIME) that exist within a patient's tumor, the ability to predict and guide immunotherapeutic responsiveness will improve, and new therapeutic targets will be revealed.…”
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Neural Turtle Graphics for Modeling City Road Layouts by Chu, Hang, Li, Daiqing, Acuna, David, Kar, Amlan, Shugrina, Maria, Wei, Xinkai, Liu, Ming-Yu, Torralba, Antonio, Fidler, Sanja

“…In addition to synthesis, the proposed NTG finds uses in an analytical task of aerial road parsing. Experimental results show that it achieves state-of-the-art performance on the SpaceNet dataset.…”
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Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes by Tran, Nicholas M, Shekhar, Karthik, Whitney, Irene E, Jacobi, Anne, Benhar, Inbal, Hong, Guosong, Yan, Wenjun, Adiconis, Xian, Arnold, McKinzie E, Lee, Jung Min, Levin, Joshua Z, Lin, Dingchang, Wang, Chen, Lieber, Charles M, Regev, Aviv, He, Zhigang, Sanes, Joshua R

“…This study provides a systematic framework for parsing type-specific responses to injury and demonstrates that differential gene expression can be used to reveal molecular targets for intervention.…”
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Neurally-guided structure inference by Lu, Sidi, Mao, Jiayuan, Tenenbaum, Joshua B, Wu, Jiajun

“…We evaluate our algorithm on two representative structure inference tasks: probabilistic matrix decomposition and symbolic program parsing. It outperforms data-driven and search-based alternatives on both tasks.…”
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MedKnowts: Unified Documentation and Information Retrieval for Electronic Health Records by Murray, Luke, Gopinath, Divya, Agrawal, Monica, Horng, Steven, Sontag, David, Karger, David R

“…MedKnowts leverages this structure to enable easier parsing of long notes, auto-populated text, and proactive information retrieval, easing the documentation burden.…”
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Storied navigation : toward media collection-based storytelling by Shen, Edward Yu-Te

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Automated Speech Recognition in air traffic control by Trikas, Thanassis

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Engineering liver by Griffith, Linda G., Wells, Alan, Stolz, Donna B.

“…Arguably less appreciated is the parallel growth in computational systems biology approaches toward these same problems—particularly in parsing complex disease processes from clinical material, building models of response networks, and in how to interpret the growing compendium of data on drug efficacy and toxicology in patient populations. …”
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Becoming foreign in the Victorian novel: international migration in Little Dorrit and Villette by Wagner, Tamara Silvia

“…In depicting migratory characters as embodiments of loneliness, while establishing it as a shared experience through parallel plots, nineteenth-century novels map out possible connections in a globalizing world. In parsing the interplay of isolation and imaginary sympathy in two texts of the 1850s, Charles Dickens's Little Dorrit and Charlotte Brontë's Villette, I argue that the experience of feeling foreign while working abroad enables characters to seek connections that transcend boundaries of class and national identity, even as the sympathy they imagine might be flawed, warped by projection and identification. …”
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Feeling our way to an analysis of English possessed idioms by Flickinger, Daniel, Bond, Francis, Ho, Jia Qian

“…It has been implemented in the English Resource Grammar, and tested by parsing a subset of the British National Corpus. In addition to the syntactic analysis, we have linked the idioms to entries in the Princeton Wordnet, to allow for further lexical semantic analysis…”
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Building an HPSG Chinese grammar (Zhong) by Fan, Zhenzhen

“…A treebank with 798 sentences has been built with the parse trees from the grammar’s output. With appropriate trees manually selected from the parses, the treebank was used as a gold standard to train a statistical model which can be used to rank the grammar’s output parse trees, both to improve its performance in applications and to be helpful to grammar engineers during development and debugging. …”
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Towards a Situation-Aware Architecture for the Wisdom Web of Things by Eguchi, A, Nguyen, H, Thompson, C, Deneke, W

“…Various open research issues related to internal computer representations needed to model real or virtual worlds are identified, and challenges of using those representations to generate visualizations in a virtual world and of ``parsing'' the real world to recognize and record these data structures are also discussed. …”

Semantic Understanding of Scenes Through the ADE20K Dataset by Zhou, Bolei, Zhao, Hang, Puig Fernandez, Xavier, Xiao, Tete, Fidler, Sanja, Barriuso, Adela, Torralba, Antonio

“…Based on ADE20K, we construct benchmarks for scene parsing and instance segmentation. We provide baseline performances on both of the benchmarks and re-implement state-of-the-art models for open source. …”
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The bedrock structured programming system by Chlipala, Adam

“…Our macro interface is expressive enough to support features that low-level programs usually only access through external tools with no formal guarantees, such as declarative parsing or SQL-inspired querying. The abstraction level of these macros only imposes a compile-time cost, via the execution of functional Coq programs that compute programs in our intermediate language; but the run-time cost is not substantially greater than for more conventional C code. …”
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Human physiomimetic model integrating microphysiological systems of the gut, liver, and brain for studies of neurodegenerative diseases by Trapecar, Martin, Wogram, Emile, Svoboda, Devon, Communal, Catherine, Omer, Attya, Lungjangwa, Tenzin, Sphabmixay, Pierre, Velazquez, Jason, Schneider, Kirsten, Wright, Charles W, Mildrum, Samuel, Hendricks, Austin, Levine, Stuart, Muffat, Julien, Lee, Meelim Jasmine, Lauffenburger, Douglas A, Trumper, David, Jaenisch, Rudolf, Griffith, Linda G

“…Of particular interest is the gut/microbiome-liver-brain axis for parsing out how genetic and environmental factors contribute to NDs. …”
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Structural Supervision Improves Learning of Non-Local Grammatical Dependencies

“…Using controlled experimental methods from psycholinguistics, we compare the performance of word-based LSTM models versus two models that represent hierarchical structure and deploy it in left-to-right processing: Recurrent Neural Network Grammars (RNNGs) (Dyer et al., 2016) and a incrementalized version of the Parsing-as-Language-Modeling configuration from Charniak et al. (2016). …”
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Discovering the Language of Actions by Sharma, Pratyusha

“…How can a stream of continuous data be parsed into skills/concepts and can we tie the decision of what may be the right set of skills with the problem of generating plans over a continuous action space as in the original stream of data? …”
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Unified Documentation and Information Retrieval for Electronic Health Records by Murray, Luke

“…MedKnowts leverages this structure to enable easier parsing of long notes, auto-populated text, and proactive information retrieval, easing the documentation burden.…”
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The Shape of Music. Computational Specification of Hand Gestures in Piano Playing. by Lamprou, Aikaterini

“…To exemplify how motion and music data could be decomposed into gestures, I presented an outline for a shape grammar for parsing musical performances. I concluded that expressive patterns detected in the played music and hand motion could be combined to identify and study gestures according to stylistic elements of piano performance. …”
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A Multi-Objective, Decomposition-Based Algorithm Design Methodology and its Application to Runway Operations Planning by Anagnostakis, Ioannis, Clarke, John-Paul

“…These observations enabled the parsing of the set of functions and the set of parameters in subsets, so that the problem can be addressed sequentially in more than one stage where different parameter subsets are treated in different stages. …”
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