The Pfam protein families database. by Finn, R, Mistry, J, Tate, J, Coggill, P, Heger, A, Pollington, J, Gavin, O, Gunasekaran, P, Ceric, G, Forslund, K, Holm, L, Sonnhammer, E, Eddy, SR, Bateman, A

“…Pfam is a widely used database of protein families and domains. …”

The Pfam protein families database. by Punta, M, Coggill, P, Eberhardt, R, Mistry, J, Tate, J, Boursnell, C, Pang, N, Forslund, K, Ceric, G, Clements, J, Heger, A, Holm, L, Sonnhammer, E, Eddy, SR, Bateman, A, Finn, R

“…Pfam is available via servers in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/). …”

The Pfam protein families database by Punta, M, Coggill, P, Eberhardt, R, Mistry, J, Tate, J, Boursnell, C, Pang, N, Forslund, K, Ceric, G, Clements, J, Heger, A, Holm, L, Sonnhammer, E, Eddy, SR, Bateman, A, Finn, R

“…Pfam is available via servers in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/). …”

Pfam: clans, web tools and services. by Finn, R, Mistry, J, Schuster-Böckler, P, Griffiths-Jones, S, Hollich, V, Lassmann, T, Moxon, S, Marshall, M, Khanna, A, Durbin, R, Eddy, SR, Sonnhammer, E, Bateman, A

“…Pfam is a database of protein families that currently contains 7973 entries (release 18.0). …”

Pathogenic variation types in human genes relate to diseases through Pfam and InterPro mapping by Giulia Babbi, Castrense Savojardo, Davide Baldazzi, Pier Luigi Martelli, Rita Casadio, Rita Casadio

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Structural Analysis of the Outer Membrane Lipoprotein BBA14 (OrfD) and the Corresponding Paralogous Gene Family 143 (PFam143) from <i>Borrelia burgdorferi</i> by Inara Akopjana, Kalvis Brangulis

“…BBA14 does not share sequence identity with any other known proteins, and it is one of the ten members of the paralogous gene family 143 (PFam143). PFam143 members are known as orfD proteins from a genetic locus, designated 2.9. …”
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Analysis of Pneumocystis Transcription Factor Evolution and Implications for Biology and Lifestyle by Ryan Ames, Alistair J. P. Brown, Ivana Gudelj, Olga A. Nev

Subjects: “…Pfam…”
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The Vaccinia Virus DNA Helicase Structure from Combined Single-Particle Cryo-Electron Microscopy and AlphaFold2 Prediction by Stephanie Hutin, Wai Li Ling, Nicolas Tarbouriech, Guy Schoehn, Clemens Grimm, Utz Fischer, Wim P. Burmeister

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Structural and Functional Analysis of BBA03, <i>Borrelia burgdorferi</i> Competitive Advantage Promoting Outer Surface Lipoprotein by Jēkabs Fridmanis, Raitis Bobrovs, Kalvis Brangulis, Kaspars Tārs, Kristaps Jaudzems

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Transcription Factors in <i>Aureobasidium</i> spp.: Classification, Regulation and a Newly Built Database by Guang Yang, Yuhan Wang, Yaowei Fang, Hongjuan Mo, Zhihong Hu, Xiaoyue Hou, Shu Liu, Zhongwei Chen, Shulei Jia

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Identification of the Ricin-B-Lectin LdRBLk in the Colorado Potato Beetle and an Analysis of Its Expression in Response to Fungal Infections by Ulyana N. Rotskaya, Vadim Yu. Kryukov, Elena Kosman, Maksim Tyurin, Viktor V. Glupov

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Distribution of Type I Restriction–Modification Systems in Streptococcus suis: An Outlook by Niels Willemse, Constance Schultsz

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Prediction and characterization of protein-protein interaction networks in swine by Wang Fen, Liu Min, Song Baoxing, Li Dengyun, Pei Huimin, Guo Yang, Huang Jingfei, Zhang Deli

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Structural and Functional Characterization of the ABA-Water Deficit Stress Domain from Wheat and Barley: An Intrinsically Disordered Domain behind the Versatile Functions of the Pl... by Ines Yacoubi, Karama Hamdi, Patrick Fourquet, Christophe Bignon, Sonia Longhi

Subjects: “…Pfam 02496…”
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Prediction of the mobility and persistence of eight antibiotics based on soil characteristics by R.P.J.J. Rietra, B.J.A. Berendsen, Y. Mi-Gegotek, P.F.A.M. Römkens, A.M. Pustjens

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Self-healing behaviors and its effectiveness evaluations of fiber reinforced shape memory polyurethane/SBS modified asphalt mortar by Wenjing Xia, Zihang Xu, Tao Xu

“…Then shape memory properties of lignin fiber reinforced PSAM (LFAM) and polyester fiber reinforced PSAM (PFAM) were characterized. The effects of filler-asphalt ratio and fiber type on the multi-cycle self-healing results of LFAM and PFAM were discussed. …”
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Tiki, at the head of a new superfamily of enzymes. by Sanchez-Pulido, L, Ponting, C

“…Here, we show that Tiki proteins are members of a new superfamily of domains contained not just in TraB proteins, but also in erythromycin esterase (Pfam ID: PF05139), DUF399 (domain of unknown function 399; Pfam ID: PF04187) and MARTX toxins that contribute to host invasion and pathogenesis by bacteria. …”

Functional Genomics Differentiate Inherent and Environmentally Influenced Traits in Dinoflagellate and Diatom Communities by Stephanie Elferink, Uwe John, Stefan Neuhaus, Sylke Wohlrab

“…Despite the overall geographic similarity of functional responses, abiotic (i.e., temperature and salinity; ~800 Pfam domains) and biotic (i.e., taxonomic group; ~1500 Pfam domains) factors influencing particular functional responses were identified. …”
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Exploring Gut Microbiome in Predicting the Efficacy of Immunotherapy in Non-Small Cell Lung Cancer by Ben Liu, Justin Chau, Qun Dai, Cuncong Zhong, Jun Zhang

“…Our results showed that the RF classifier achieved the highest F-score (85.2%) and the area under the receiver operating characteristic curve (AUC) (95%) using the protein families (Pfam) profile, and the MLP neural network classifier achieved a 99.9% F-score and 100% AUC using the same Pfam profile. …”
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DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets. by Elena Tea Russo, Federico Barone, Alex Bateman, Stefano Cozzini, Marco Punta, Alessandro Laio

“…Our automatic classification is in close correspondence to the ones of the Pfam and ECOD resources: in particular, about 81% of medium-large Pfam families and 72% of ECOD families can be mapped to clusters generated by DPCfam. …”
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