What Is an “Arachnid”? Consensus, Consilience, and Confirmation Bias in the Phylogenetics of Chelicerata by Prashant P. Sharma, Jesús A. Ballesteros, Carlos E. Santibáñez-López

“…We demonstrate that neither saturation rate, nor the ability to assemble a molecular phylogenetic dataset supporting a given outcome with maximal nodal support, is a guarantor of phylogenetic accuracy. …”
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Correction: Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics

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Spatial phylogenetics in Hechtioideae (Bromeliaceae) reveals recent diversification and dispersal by Ricardo Rivera-Martínez, Ivón M. Ramírez-Morillo, José Arturo De-Nova, Germán Carnevali, Juan P. Pinzón, Katya J. Romero-Soler, Néstor Raigoza, María Elena Sánchez Salazar

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Characterization of tumor evolution by functional clonality and phylogenetics in hepatocellular carcinoma by Zeynep Kacar, Eric Slud, Doron Levy, Julián Candia, Anuradha Budhu, Marshonna Forgues, Xiaolin Wu, Arati Raziuddin, Bao Tran, Jyoti Shetty, Yotsawat Pomyen, Jittiporn Chaisaingmongkol, Siritida Rabibhadana, Benjarath Pupacdi, Vajarabhongsa Bhudhisawasdi, Nirush Lertprasertsuke, Chirayu Auewarakul, Suleeporn Sangrajrang, Chulabhorn Mahidol, Mathuros Ruchirawat, Xin Wei Wang

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Correction: Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics

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Phylogenetics Study to Compare Chloroplast Genomes in Four Magnoliaceae Species by Jianyun Zhao, Hu Chen, Gaiping Li, Maimaiti Aisha Jumaturti, Xiaomin Yao, Ying Hu

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Progress in phylogenetics, multi-omics and flower coloration studies in Rhododendron by Shuai Nie, Hai-Yao Ma, Tian-Le Shi, Xue-Chan Tian, Yousry A. El-Kassaby, Ilga Porth, Fu-Sheng Yang, Jian-Feng Mao

“…We describe advances in phylogenetic reconstruction and genome sequencing of Rhododendron species. …”
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Data-specific substitution models improve protein-based phylogenetics by João M. Brazão, Peter G. Foster, Cymon J. Cox

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Clone Phylogenetics Reveals Metastatic Tumor Migrations, Maps, and Models by Antonia Chroni, Sayaka Miura, Lauren Hamilton, Tracy Vu, Stephen G. Gaffney, Vivian Aly, Sajjad Karim, Maxwell Sanderford, Jeffrey P. Townsend, Sudhir Kumar

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Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics by Mathieu Fourment, Aaron E. Darling

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Suprageneric phylogenetics of Myrteae, the generically richest tribe in Myrtaceae (Myrtales) by Lucas, E, Harris, S, Mazine, F, Bellsham, SR, Lughadha, E, Telford, A, Gasson, P, Chase, M

“…To clarify relationships within the predominantly Neotropical and exclusively fleshy-fruited Myrteae (49 genera and c. 2,500 species), we provide a phylogenetic hypothesis for evolutionary relationships between 31 of these genera by analyzing nuclear ITS and ETS ribosomal DNA, and plastid psbA-trnH and matK DNA sequences from 75 Myrteae species and 13 outgroup taxa using parsimony and Bayesian inference. …”

Comparative genome and phylogenetic analysis revealed the complex mitochondrial genome and phylogenetic position of Conopomorpha sinensis Bradley by Hong Chang, Jianglong Guo, Mingzhi Li, Yan Gao, Siwei Wang, Xiaonan Wang, Yanping Liu

“…Furthermore, the results of phylogenetic analysis showed that the litchi fruit borer belonged to Gracillariidae, and Gracillariidae was monophyletic. …”
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Correction: Quantifying Phylogenetic Beta Diversity: Distinguishing between ‘True’ Turnover of Lineages and Phylogenetic Diversity Gradients. by Fabien Leprieur, Camille Albouy, Julien De Bortoli, Peter F. Cowman, David R. Bellwood, David Mouillot

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Molecular evolution and targeted recombination of SARS-CoV-2 in South Korea by Atanas V. Demirev, Kyuyoung Lee, Joon-Yong Bae, Heedo Park, Sejik Park, Hyunbeen Kim, Jungmin Lee, Junhyung Cho, Jeong-Sun Yang, Kyung-Chang Kim, Joo-Yeon Lee, Kisoon Kim, Philippe Lemey, Man-Seong Park, Jin Il Kim

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Phylogenetic patterns in regional flea assemblages from 6 biogeographic realms: strong links between flea and host phylogenetic turnovers and weak effects of phylogenetic originality on host specificity by Boris R. Krasnov, Georgy I. Shenbrot, Irina S. Khokhlova

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Phylogenetic networks : concepts, algorithms and applications / by Huson, Daniel H., Rupp, Regula, Scornavacca, Celine

“…This book provides the first interdisciplinary overview of phylogenetic networks. Beginning with a concise introduction to both phylogenetic trees and phylogenetic networks, the fundamental concepts and results are then presented for both rooted and unrooted phylogenetic networks. …”

Phylogenetic analysis of CPV isolate of Manipur by RAJKUMARI SANJUKTA, MAHESH KUMAR, RAJKUMARI MANDAKINI, JOKEN BAM, I KARUNA, NAGAPPA K, S P SINGH

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Host-symbiont-gene phylogenetic reconciliation by Menet, Hugo, Trung, Alexia Nguyen, Daubin, Vincent, Tannier, Eric

“…The evolution of such systems is approached by phylogenetic reconciliation, which describes the common patterns of diversification between two different levels, e.g. genes and species, or hosts and symbionts for example. …”
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Phylogenetic quantification of intra-tumour heterogeneity. by Roland F Schwarz, Anne Trinh, Botond Sipos, James D Brenton, Nick Goldman, Florian Markowetz

“…To address these challenges, we present MEDICC, a method for phylogenetic reconstruction and heterogeneity quantification based on a Minimum Event Distance for Intra-tumour Copy-number Comparisons. …”
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The agreement distance of rooted phylogenetic networks by Jonathan Klawitter

“…The minimal number of rooted subtree prune and regraft (rSPR) operations needed to transform one phylogenetic tree into another one induces a metric on phylogenetic trees - the rSPR-distance. …”
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