A generalized approach to predicting protein-protein interactions between virus and host by Xiang Zhou, Byungkyu Park, Daesik Choi, Kyungsook Han

Subjects: “…Interspecies protein-protein interaction…”
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QPath: a method for querying pathways in a protein-protein interaction network by Ruppin Eytan, Segal Daniel, Shlomi Tomer, Sharan Roded

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A novel functional module detection algorithm for protein-protein interaction networks by Zhang Aidong, Cho Young-Rae, Hwang Woochang, Ramanathan Murali

“…<p>Abstract</p> <p>Background</p> <p>The sparse connectivity of protein-protein interaction data sets makes identification of functional modules challenging. …”
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A Strategy Utilizing Protein–Protein Interaction Hubs for the Treatment of Cancer Diseases by Nicolas Carels, Domenico Sgariglia, Marcos Guilherme Vieira Junior, Carlyle Ribeiro Lima, Flávia Raquel Gonçalves Carneiro, Gilberto Ferreira da Silva, Fabricio Alves Barbosa da Silva, Rafaela Scardini, Jack Adam Tuszynski, Cecilia Vianna de Andrade, Ana Carolina Monteiro, Marcel Guimarães Martins, Talita Goulart da Silva, Helen Ferraz, Priscilla Vanessa Finotelli, Tiago Albertini Balbino, José Carlos Pinto

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Normalized L3-based link prediction in protein–protein interaction networks by Ho Yin Yuen, Jesper Jansson

Subjects: “…Protein–Protein Interaction…”
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Inferring the Effects of Protein Variants on Protein–Protein Interactions with Interpretable Transformer Representations by Zhe Liu, Wei Qian, Wenxiang Cai, Weichen Song, Weidi Wang, Dhruba Tara Maharjan, Wenhong Cheng, Jue Chen, Han Wang, Dong Xu, Guan Ning Lin

“…Identifying pathogenetic variants and inferring their impact on protein–protein interactions sheds light on their functional consequences on diseases. …”
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Selected Approaches to Disrupting Protein–Protein Interactions within the MAPK/RAS Pathway by Stephen J. Harwood, Christopher R. Smith, J. David Lawson, John M. Ketcham

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Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling by Hunter Lawrence, Karimpour-Fard Anis, Gill Ryan T

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Protein-Protein Interactions Prediction Based on Graph Energy and Protein Sequence Information by Da Xu, Hanxiao Xu, Yusen Zhang, Wei Chen, Rui Gao

Subjects: “…protein-protein interaction…”
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An inter-species protein-protein interaction network across vast evolutionary distance by Zhong, Quan, Pevzner, Samuel J., Hao, Tong, Wang, Yang, Mosca, Roberto, Menche, Jörg, Taipale, Mikko, Taşan, Murat, Fan, Changyu, Yang, Xinping, Haley, Patrick, Murray, Ryan R., Mer, Flora, Gebreab, Fana, Tam, Stanley, MacWilliams, Andrew, Dricot, Amélie, Reichert, Patrick, Santhanam, Balaji, Ghamsari, Lila, Calderwood, Michael A., Rolland, Thomas, Charloteaux, Benoit, Lindquist, Susan, Barabási, Albert‐László, Hill, David E., Aloy, Patrick, Cusick, Michael E., Xia, Yu, Roth, Frederick P., Vidal, Marc

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Uncovering the basis of protein-protein interaction specificity with a combinatorially complete library by Lite, Thuy-Lan V, Grant, Robert A, Nocedal, Isabel, Littlehale, Megan L, Guo, Monica S, Laub, Michael T

“…All rights reserved. Protein-protein interaction specificity is often encoded at the primary sequence level. …”
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Enzyme-mediated labeling of proteins and protein-protein interactions in vitro and in living cells by Slavoff, Sarah Ann

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Structural stabilization of protein nano-capsules via modification of protein-protein interactions. by Soleymani Ardejani, Maziar.

“…To achieve this, different methods, a) alignment-based design, b) protein grafting, and c) computational protein design, were all applied to investigate and to optimize the role protein-protein interactions play in the stability and the self-assembly of this protein. …”
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Imaging beads-retained prey assay for rapid and quantitative protein-protein interaction by Zhou, Y., Hong, Wanjin, Lu, Lei

“…Here, we report the imaging beads-retained prey (IBRP) assay that is rapid and quantitative in studying protein-protein interactions. In this assay, the bait is immobilized onto beads and the prey is fused with a fluorescence protein. …”
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Delineation of a unique protein-protein interaction site on the surface of the estrogen receptor. by Kong, E, Heldring, N, Gustafsson, J, Treuter, E, Hubbard, R, Pike, A

Protein-protein interaction site mapping using NMR-detected mutational scanning. by Baminger, B, Ludwiczek, M, Kontaxis, G, Knapp, S, Konrat, R

“…We demonstrate a novel NMR method for the mapping of protein-protein interaction sites. In our approach protein-protein binding sites are mapped by competition binding experiments using indirect NMR reporter technology and Ala positional scanning. …”

Protein-protein interaction analysis highlights additional loci of interest for multiple sclerosis by Ragnedda, G, Disanto, G, Giovannoni, G, Ebers, G, Sotgiu, S, Ramagopalan, S

“…We conducted a protein-protein interaction (PPI) analysis of gene products coded in loci recently reported to be MS associated at the genome-wide significance level and in loci suggestive of MS association. …”

A homogeneous method for investigation of methylation-dependent protein-protein interactions in epigenetics. by Quinn, A, Bedford, M, Espejo, A, Spannhoff, A, Austin, C, Oppermann, U, Simeonov, A

Consequences of inducing intrinsic disorder in a high-affinity protein-protein interaction. by Papadakos, G, Sharma, A, Lancaster, L, Bowen, R, Kaminska, R, Leech, A, Walker, D, Redfield, C, Kleanthous, K

Coarse-Grained MD Simulations and Protein-Protein Interactions: The Cohesin-Dockerin System by Hall, B, Sansom, M

“…Coarse-grained molecular dynamics (CG-MD) may be applied as part of a multiscale modeling approach to protein-protein interactions. The cohesin-dockerin interaction provides a valuable test system for evaluation of the use of CG-MD, as structural (X-ray) data indicate a dual binding mode for the cohesin-dockerin pair. …”