Exploring protein folding mechanisms to enable the protein structure prediction of previously intractable targets by West, C

“…<p>The prediction of a protein structure from its amino acid sequence is one of the grand challenges of computational biology. …”

Towards Understanding The Protein Structure And Its Problems: Selecting Data Sources And Data Representation. by Sallim, Jamaludin, Abdul Hamid, Roslina, Abdullah, Rosni, Khader, Ahmad Tajudin

“…This paper aims to provide a basic idea for bio informatics researchers in gearing their works on protein structure. We will discuss generally on the protein structure, accessing the data and represent them with using selected visualization tools. …”
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Protein structure prediction using robust principal component analysis and support vector machine by Zakaria, Nur Aini, Ali Shah, Zuraini, Kasim, Shahreen

“…Existence of bioinformatics is to increase the further understanding of biological process. Proteins structure is one of the major challenges in structural bioinformatics. …”
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Structural studies of the type three secretion system export apparatus by Kuhlen, L

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RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold by West, C, de Oliveira, S, Deane, C

A workflow for protein structure determination from thin crystal lamella by micro-electron diffraction by Beale, EV, Waterman, DG, Hecksel, C, van Rooyen, J, Gilchrist, JB, Parkhurst, JM, de Haas, F, Buijsse, B, Evans, G, Zhang, P

The MemProtMD database: A resource for membrane-embedded protein structures and their lipid interactions by Newport, T, Sansom, M, Stansfeld, P

“…In 2015, the MemProtMD pipeline was developed to allow the automated lipid bilayer assembly around new membrane protein structures, released from the Protein Data Bank. …”

Protein structure and interaction under environmental stress : from quality control recognition to evolution of collective behavior by Brock, Kelly Paige

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Predicting rifampicin resistance in M. tuberculosis using machine learning informed by protein structural and chemical features by Lynch, C, Adlard, D, Fowler, P

Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction by de Oliveira, S, Law, E, Shi, J, Deane, C

“…Our comparison reveals that a sequential search strategy can be used to drastically reduce computational time of de novo protein structure prediction and improve accuracy.</p> <p>Availability: Data is available for download from: http://opig.stats.ox.ac.uk/resources. …”

Isolation of transketolase gene, subcellular localization, and transketolase protein structure studies of sugarcane (Saccharum officinarum. L) by Kalhori, Nahid

“…This study focused on isolation, identification, subcellular localisation, protein structure prediction of transketolase enzyme from sugarcane, Saccharum officinarum. …”
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Ab-initio protein structure prediction of Leucosporidium antarcticum antifreeze proteins using I-TASSER simulations by Abdul Rahman, Mohd Basyaruddin, Zulkifli, Mohamad Fairuz, Basri, Mahiran, Raja Abdul Rahman, Raja Noor Zaliha, Salleh, Abu Bakar

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Structural studies of pestivirus envelope glycoproteins by Aitkenhead, H

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Protein–protein interactions modulate the docking-dependent E3-ubiquitin ligase activity of Carboxy-terminus of Hsc70-interacting protein (CHIP) by Narayan, Vikram, Landré, Vivien, Ning, Jia, Hernychova, Lenka, Muller, Petr, Verma, Chandra, Walkinshaw, Malcolm D., Blackburn, Elizabeth A., Ball, Kathryn L.

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Perturbations of native membrane protein structure in alkyl phosphocholine detergents: a critical assessment of NMR and biophysical studies by Chipot, C, Dehez, F, Schnell, JR, Zitzmann, N, Pebay-Peyroula, E, Catoire, LJ, Miroux, B, Kunji, ERS, Veglia, G, Cross, TA, Schanda, P

Role of protein structure in variant annotation: structural insight of mutations causing 6-pyruvoyl-tetrahydropterin synthase deficiency by Muniz, J, Szeto, N, Frise, R, Lee, W, Wang, X, Thöny, B, Himmelreich, N, Blau, N, Hsiao, K, Liu, T, Gileadi, O, Oppermann, U, Von Delft, F, Yue, W, Tang, N

“…However, software to analyse mutation in the perspective of 3D protein structure is far less readily available than other in silico prediction tools.…”

A predominant β-CGTase G1 engineered to elucidate the relationship between protein structure and product specificity by Goh, Kian Mau, Mahadi, Nor Muhammad, Hassan, Osman, Raja Abdul Rahman, Raja Noor Zaliha, Md IIlias, Rosli

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3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling by Yaakob, Nor Suhaila, Abdullah, Hasdianty, Mohamad, Rosfarizan, Ibrahim, Abdul Latif, Ariff, Arbakariya

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A predominant β-CGTase G1 engineered to elucidate the relationship between protein structure and product specificity by Goh, Kin Mau, Mahadi, Nor Muhammad, Hassan, Osman, Rahman, Raja Noor Zaliha Raja Abdul, Illias, Rosli Md

Structural and mechanistic studies on γ-butyrobetaine hydroxylase. by Leung, I, Krojer, T, Kochan, G, Henry, L, von Delft, F, Claridge, T, Oppermann, U, McDonough, M, Schofield, C

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