The microbiology of indwelling pleural catheter infections by Dheeraj Sethi, Mark Webber, Eleanor K Mishra

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SARS-CoV-2 mutations on diagnostic gene targets in the second wave in Zimbabwe: A retrospective genomic analysis by C Nyagupe, L de Oliveira Martins, H Gumbo, T Mashe, T Takawira, KK Maeka, A Juru, LK Chikanda, AR Tauya, AJ Page, RA Kingsley, R Simbi, J Chirenda, J Manasa, V Ruhanya, RT Mavenyengwa

“…A total of 377 samples weresequenced at Quadram Institute Bioscience. After quality control, 192 sequences passed and were analysed.Results. …”
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Mechanistic Insights Into the Cross-Feeding of Ruminococcus gnavus and Ruminococcus bromii on Host and Dietary Carbohydrates by Emmanuelle H. Crost, Gwenaelle Le Gall, Jenny A. Laverde-Gomez, Indrani Mukhopadhya, Harry J. Flint, Nathalie Juge

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What We Learned From Big Data for Autophagy Research by Anne-Claire Jacomin, Lejla Gul, Padhmanand Sudhakar, Padhmanand Sudhakar, Tamas Korcsmaros, Tamas Korcsmaros, Ioannis P. Nezis

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Nutrient smuggling: Commensal gut bacteria‐derived extracellular vesicles scavenge vitamin B12 and related cobamides for microbe and host acquisition by Rokas Juodeikis, Emily Jones, Evelyne Deery, David M. Beal, Régis Stentz, Bernhard Kräutler, Simon R. Carding, Martin J. Warren

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Clinical Performance of Direct RT-PCR Testing of Raw Saliva for Detection of SARS-CoV-2 in Symptomatic and Asymptomatic Individuals by Rosa Castillo-Bravo, Noel Lucca, Linyi Lai, Killian Marlborough, Galina Brychkova, Maryam Shideh Sakhteh, Charlie Lonergan, Justin O’Grady, Nabil-Fareed Alikhan, Alexander J. Trotter, Andrew J. Page, Breda Smyth, Peter C. McKeown, Jelena D. M. Feenstra, Camilla Ulekleiv, Oceane Sorel, Manoj Gandhi, Charles Spillane

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Special Issue: Gut Bacteria-Mucus Interaction by Nathalie Juge

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Restoration of wild-type motility to flagellin-knockout Escherichia coli by varying promoter, copy number and induction strength in plasmid-based expression of flagellin by Nicholas M. Thomson, Mark J. Pallen

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Benchtop (60 MHz) proton NMR spectroscopy for quantification of 16-O-methylcafestol in lipophilic extracts of ground roast coffee by Y. Gunning, M. Defernez, E.K. Kemsley

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Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing by Klara Cerk, Pablo Ugalde‐Salas, Chabname Ghassemi Nedjad, Maxime Lecomte, Coralie Muller, David J. Sherman, Falk Hildebrand, Simon Labarthe, Clémence Frioux

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A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis by Johanne Brooks-Warburton, Dezso Modos, Padhmanand Sudhakar, Matthew Madgwick, John P. Thomas, Balazs Bohar, David Fazekas, Azedine Zoufir, Orsolya Kapuy, Mate Szalay-Beko, Bram Verstockt, Lindsay J. Hall, Alastair Watson, Mark Tremelling, Miles Parkes, Severine Vermeire, Andreas Bender, Simon R. Carding, Tamas Korcsmaros

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Dynamics of competing SARS-CoV-2 variants during the Omicron epidemic in England by Oliver Eales, Leonardo de Oliveira Martins, Andrew J. Page, Haowei Wang, Barbara Bodinier, David Tang, David Haw, Jakob Jonnerby, Christina Atchison, Deborah Ashby, Wendy Barclay, Graham Taylor, Graham Cooke, Helen Ward, Ara Darzi, Steven Riley, Paul Elliott, Christl A. Donnelly, Marc Chadeau-Hyam

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Genomic surveillance of SARS-CoV-2 in COVID-19 vaccinated healthcare workers in Lebanon by Habib AlKalamouni, Farouk F. Abou Hassan, Mirna Bou Hamdan, Andrew J. Page, Martin Lott, Michaela Matthews, Nada Ghosn, Alissar Rady, Rami Mahfouz, George F. Araj, Ghassan Dbaibo, Hassan Zaraket, Nada M. Melhem, Ghassan M. Matar

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Chemical, physical and glycaemic characterisation of PulseON®: A novel legume cell-powder ingredient for use in the design of functional foods by Cathrina H. Edwards, Peter Ryden, Ana M. Pinto, Alice van der Schoot, Costanza Stocchi, Natalia Perez-Moral, Peter J. Butterworth, Balazs Bajka, Sarah E. Berry, Sandra E. Hill, Peter R. Ellis

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Advancing Research and Treatment: An Overview of Clinical Trials in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) and Future Perspectives by Katharine A. Seton, José A. Espejo-Oltra, Karen Giménez-Orenga, Rik Haagmans, Donia J. Ramadan, Jesper Mehlsen

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Pervasive associations between dark septate endophytic fungi with tree root and soil microbiomes across Europe by Tarquin Netherway, Jan Bengtsson, Franz Buegger, Joachim Fritscher, Jane Oja, Karin Pritsch, Falk Hildebrand, Eveline J. Krab, Mohammad Bahram

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Dynamics of a national Omicron SARS-CoV-2 epidemic during January 2022 in England by Paul Elliott, Oliver Eales, Barbara Bodinier, David Tang, Haowei Wang, Jakob Jonnerby, David Haw, Joshua Elliott, Matthew Whitaker, Caroline E. Walters, Christina Atchison, Peter J. Diggle, Andrew J. Page, Alexander J. Trotter, Deborah Ashby, Wendy Barclay, Graham Taylor, Helen Ward, Ara Darzi, Graham S. Cooke, Marc Chadeau-Hyam, Christl A. Donnelly

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Dynamics of extended-spectrum cephalosporin resistance genes in Escherichia coli from Europe and North America by Roxana Zamudio, Patrick Boerlin, Racha Beyrouthy, Jean-Yves Madec, Stefan Schwarz, Michael R. Mulvey, George G. Zhanel, Ashley Cormier, Gabhan Chalmers, Richard Bonnet, Marisa Haenni, Inga Eichhorn, Heike Kaspar, Raquel Garcia-Fierro, James L. N. Wood, Alison E. Mather

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Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species by Arnaud Belcour, Clémence Frioux, Méziane Aite, Anthony Bretaudeau, Falk Hildebrand, Anne Siegel

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Effects of Human Milk Oligosaccharides on the Adult Gut Microbiota and Barrier Function by Tanja Šuligoj, Louise Kristine Vigsnæs, Pieter Van den Abbeele, Athanasia Apostolou, Katia Karalis, George M. Savva, Bruce McConnell, Nathalie Juge

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