Methods, Challenges and Potentials of Single Cell RNA-seq by Daniel Hebenstreit

Subjects: “…RNA-seq…”
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Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis by Yasuko Akiyama-Oda, Yasuko Akiyama-Oda, Yasuko Akiyama-Oda, Takanori Akaiwa, Takanori Akaiwa, Hiroki Oda, Hiroki Oda

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Preliminary exploration of mRNA, lncRNA, and miRNA expressions in the bovine jejunum unveils novel aspects of Mycobacterium avium subspecies paratuberculosis infections by Yahui Gao, Jie Cao, Bo Han, Dongxiao Sun

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Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows by Elena Denisenko, Belinda B. Guo, Matthew Jones, Rui Hou, Leanne de Kock, Timo Lassmann, Daniel Poppe, Olivier Clément, Rebecca K. Simmons, Ryan Lister, Alistair R. R. Forrest

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scDC: single cell differential composition analysis by Yue Cao, Yingxin Lin, John T. Ormerod, Pengyi Yang, Jean Y.H. Yang, Kitty K. Lo

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Single-cell transcriptome profiles of Drosophila fruitless-expressing neurons from both sexes by Colleen M Palmateer, Catherina Artikis, Savannah G Brovero, Benjamin Friedman, Alexis Gresham, Michelle N Arbeitman

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Multi-scalar data integration decoding risk genes for chronic kidney disease by Shiqi Ding, Jing Guo, Huimei Chen, Enrico Petretto

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Exploring the cellular and molecular differences between ovarian clear cell carcinoma and high-grade serous carcinoma using single-cell RNA sequencing and GEO gene expression signa... by Dan Guo, Sumei Zhang, Yike Gao, Jinghua Shi, Xiaoxi Wang, Zixin Zhang, Yaran Zhang, Yuming Wang, Kun Zhao, Mei Li, Anqi Wang, Pan Wang, Yanqin Gou, Miao Zhang, Meiyu Liu, Yuhan Zhang, Rui Chen, Jian Sun, Shu Wang, Xunyao Wu, Zhiyong Liang, Jie Chen, Jinghe Lang

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Long wavelength-sensing cones of zebrafish retina exhibit multiple layers of transcriptional heterogeneity by Ashley A. Farre, Chi Sun, Margaret R. Starostik, Samuel S. Hunter, Milton A. English, Audrey Duncan, Abirami Santhanam, Eyad Shihabeddin, John O’Brien, Anand Swaroop, Deborah L. Stenkamp

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Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools by Bob Chen, Marisol A. Ramirez-Solano, Cody N. Heiser, Qi Liu, Ken S. Lau

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Transcriptome Sequencing Unravels Potential Biomarkers at Different Stages of Cerebral Ischemic Stroke by You Cai, You Cai, Yufen Zhang, Yufen Zhang, Xiao Ke, Xiao Ke, Yu Guo, Chengye Yao, Na Tang, Pei Pang, Pei Pang, Gangcai Xie, Li Fang, Zhe Zhang, Jincheng Li, Yixian Fan, Ximiao He, Ruojian Wen, Lei Pei, Lei Pei, Youming Lu, Youming Lu

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Transcriptomics in Toxicogenomics, Part II: Preprocessing and Differential Expression Analysis for High Quality Data by Antonio Federico, Angela Serra, My Kieu Ha, Pekka Kohonen, Jang-Sik Choi, Irene Liampa, Penny Nymark, Natasha Sanabria, Luca Cattelani, Michele Fratello, Pia Anneli Sofia Kinaret, Karolina Jagiello, Tomasz Puzyn, Georgia Melagraki, Mary Gulumian, Antreas Afantitis, Haralambos Sarimveis, Tae-Hyun Yoon, Roland Grafström, Dario Greco

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Construction of ceRNA network based on RNA-seq for identifying prognostic lncRNA biomarkers in Perthes disease by Tianjiu Zhang, Xiaolin Hu, Song Yu, Chunyan Wei

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Single-cell transcriptomic profiling of dorsal root ganglion: an overview by Keyu Xie, Keyu Xie, Xu Cheng, Tao Zhu, Donghang Zhang

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Single-cell and spatial transcriptomics reveal changes in cell heterogeneity during progression of human tendinopathy by Weili Fu, Runze Yang, Jian Li

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Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes by Amelie A Raz, Gabriela S Vida, Sarah R Stern, Sharvani Mahadevaraju, Jaclyn M Fingerhut, Jennifer M Viveiros, Soumitra Pal, Jasmine R Grey, Mara R Grace, Cameron W Berry, Hongjie Li, Jasper Janssens, Wouter Saelens, Zhantao Shao, Chun Hu, Yukiko M Yamashita, Teresa Przytycka, Brian Oliver, Julie A Brill, Henry Krause, Erika L Matunis, Helen White-Cooper, Stephen DiNardo, Margaret T Fuller

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A comparison between whole transcript and 3’ RNA sequencing methods using Kapa and Lexogen library preparation methods by Feiyang Ma, Brie K. Fuqua, Yehudit Hasin, Clara Yukhtman, Chris D. Vulpe, Aldons J. Lusis, Matteo Pellegrini

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Quantifying Genomic Imprinting at Tissue and Cell Resolution in the Brain by Annie Varrault, Emeric Dubois, Anne Le Digarcher, Tristan Bouschet

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Identification and experimental validation of cuproptosis regulatory program in a sepsis immune microenvironment through a combination of single-cell and bulk RNA sequencing by Tingru Zhao, Yan Guo, Jin Li

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Molecular mechanisms regulating natural menopause in the female ovary: a study based on transcriptomic data by Quan Liu, Fangqin Wei, Jiannan Wang, Haiyan Liu, Hua Zhang, Min Liu, Kaili Liu, Zheng Ye

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