RNAseq Analysis of Brown Adipose Tissue and Thyroid of Newborn Lambs Subjected to Short-Term Cold Exposure Reveals Signs of Early Whitening of Adipose Tissue by Andrea Graña-Baumgartner, Venkata S. R. Dukkipati, Paul R. Kenyon, Hugh T. Blair, Nicolás López-Villalobos, Kristene Gedye, Patrick J. Biggs

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scRNAseq and High-Throughput Spatial Analysis of Tumor and Normal Microenvironment in Solid Tumors Reveal a Possible Origin of Circulating Tumor Hybrid Cells by Abdullah Mahmood Ali, Azra Raza

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RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection by Julien Rougeot, Vincenzo Torraca, Ania Zakrzewska, Zakia Kanwal, Hans J. Jansen, Frida Sommer, Herman P. Spaink, Annemarie H. Meijer

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RNASeq profiling of COVID19‐infected patients identified an EIF2AK2 inhibitor as a potent SARS‐CoV‐2 antiviral by Sidharth Jain, Samantha Rego, Steven Park, Yiran Liu, Simone Parn, Kush Savsani, David S. Perlin, Sivanesan Dakshanamurthy

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P444: SINGLE CELL RNASEQ UNCOVERING THE ROLE OF A LEUKEMIC DRIVER GENE FUSION CBFΒ::MYH11 IN THE LEUKEMIC–NICHE SIGNALING by Polina Derevyanko, Alexandra V Dolgikh, Minoo Ashtiani, Anja Krippner-Heidenreich, Ryan Nelson, John Bushweller, Yury Barbitoff, Alexander V Predeus, Olaf Heidenreich

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Unveiling the Complexity of Red Clover (<i>Trifolium pratense</i> L.) Transcriptome and Transcriptional Regulation of Isoflavonoid Biosynthesis Using Integrated Long- and Short-Read RNAseq by Kun Shi, Xiqiang Liu, Xinyi Pan, Jia Liu, Wenlong Gong, Pan Gong, Mingshu Cao, Shangang Jia, Zan Wang

“…Here, we used a combination of long-read (PacBio Iso-Seq) and short-read (Illumina) RNAseq sequencing to develop a more comprehensive full-length transcriptome in four tissues (root, stem, leaf, and flower) and to identify transcription factors possibly involved in isoflavonoid biosynthesis in red clover. …”
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A Leveraged Signal-to-Noise Ratio (LSTNR) Method to Extract Differentially Expressed Genes and Multivariate Patterns of Expression From Noisy and Low-Replication RNAseq Data by Oswaldo A. Lozoya, Janine H. Santos, Richard P. Woychik

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Transcriptome Sequencing (RNAseq) Enables Utilization of Formalin-Fixed, Paraffin-Embedded Biopsies with Clear Cell Renal Cell Carcinoma for Exploration of Disease Biology and Biomarker Development. by Oystein Eikrem, Christian Beisland, Karin Hjelle, Arnar Flatberg, Andreas Scherer, Lea Landolt, Trude Skogstrand, Sabine Leh, Vidar Beisvag, Hans-Peter Marti

“…This proof of concept study aimed to compare RNAseq results from FFPE biopsies with the corresponding RNAlater® (Qiagen, Germany) stored samples from clear cell renal cell carcinoma (ccRCC) patients to investigate feasibility of RNAseq in archival tissue. …”
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Single-Cell Proteomics and Tumor RNAseq Identify Novel Pathways Associated With Clofazimine Sensitivity in PI- and IMiD- Resistant Myeloma, and Putative Stem-Like Cells by Harish Kumar, Suman Mazumder, Suman Mazumder, Neeraj Sharma, Sayak Chakravarti, Mark D. Long, Nathalie Meurice, Joachim Petit, Song Liu, Marta Chesi, Sabyasachi Sanyal, A. Keith Stewart, Shaji Kumar, Leif Bergsagel, S. Vincent Rajkumar, Linda B. Baughn, Brian G. Van Ness, Amit Kumar Mitra, Amit Kumar Mitra

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Genome-wide RNAseq study of the molecular mechanisms underlying microglia activation in response to pathological tau perturbation in the rTg4510 tau transgenic animal model by Hong Wang, Yupeng Li, John W. Ryder, Justin T. Hole, Philip J. Ebert, David C. Airey, Hui-Rong Qian, Benjamin Logsdon, Alice Fisher, Zeshan Ahmed, Tracey K. Murray, Annalisa Cavallini, Suchira Bose, Brian J. Eastwood, David A. Collier, Jeffrey L. Dage, Bradley B. Miller, Kalpana M. Merchant, Michael J. O’Neill, Ronald B. Demattos

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In Silico RNAseq and Biochemical Analyses of Glucose-6-Phosphate Dehydrogenase (G6PDH) from Sweet Pepper Fruits: Involvement of Nitric Oxide (NO) in Ripening and Modulation by María A. Muñoz-Vargas, Salvador González-Gordo, Jorge Taboada, José M. Palma, Francisco J. Corpas

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Corrigendum: RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection by Julien Rougeot, Vincenzo Torraca, Ania Zakrzewska, Zakia Kanwal, Hans J. Jansen, Frida Sommer, Herman P. Spaink, Annemarie H. Meijer

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Optimized protocol for isolation of high-quality single cells from the female mouse reproductive tract tissues for single-cell RNA sequencing by Rajendra Kumar Gurumurthy, Naveen Kumar, Cindrilla Chumduri

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Protocol for computationally evaluating the loss of stoichiometry and coordinated expression of proteins by Stefan Hinz, Michael E. Todhunter, Mark A. LaBarge

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A computational approach to generate highly conserved gene co-expression networks with RNA-seq data by Zainab Arshad, John F. McDonald

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Differentially and Co-expressed Genes in Embryo, Germ-Line and Somatic Tissues of Tribolium castaneum by Sher Afzal Khan, Heather Eggleston, Kevin M. Myles, Zach N. Adelman

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Genomic and transcriptome profiling identified both human and HBV genetic variations and their interactions in Chinese hepatocellular carcinoma by Hua Dong, Ziliang Qian, Lan Zhang, Yunqin Chen, Zhenggang Ren, Qunsheng Ji

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OMiCC: An expanded and enhanced platform for meta-analysis of public gene expression data by Candace C. Liu, Yongjian Guo, Kiera L. Vrindten, William W. Lau, Rachel Sparks, John S. Tsang

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De novo transcriptome assembly and data for the blue-winged teal (Spatula discors) by Amanda C. Dolinski, Jared J. Homola, Mark D. Jankowski, Jennifer C. Owen

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Single-cell characterization of human GBM reveals regional differences in tumor-infiltrating leukocyte activation by Philip Schmassmann, Julien Roux, Steffen Dettling, Sabrina Hogan, Tala Shekarian, Tomás A Martins, Marie-Françoise Ritz, Sylvia Herter, Marina Bacac, Gregor Hutter

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