RNAseq Reveals Sensitive, Concentration-Dependent Transcriptional Markers of Copper in Mytilus californianus Larvae and Adults by Megan R. Hall, James W. Moffett, Andrew Y. Gracey

Subjects: “…RNAseq…”
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Exploring the ovine sperm transcriptome by RNAseq techniques. I Effect of seasonal conditions on transcripts abundance by Irene Ureña, Carmen González, Manuel Ramón, Marta Gòdia, Alex Clop, Jorge H. Calvo, Mª Jesús Carabaño, Magdalena Serrano

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Hierarchical Clustering of DNA k-mer Counts in RNAseq Fastq Files Identifies Sample Heterogeneities by Wolfgang Kaisers, Holger Schwender, Heiner Schaal

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Tracking Mycoviruses in Public RNAseq Datasets of <i>Malassezia</i>: Three Original Totiviruses Revealed by Fatima Boulanouar, Stéphane Ranque, Anthony Levasseur

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Comprehensive Molecular Profiling of NPM1-Mutated Acute Myeloid Leukemia Using RNAseq Approach by Jessica Petiti, Ymera Pignochino, Aurora Schiavon, Emilia Giugliano, Enrico Berrino, Giorgia Giordano, Federico Itri, Matteo Dragani, Daniela Cilloni, Marco Lo Iacono

“…This study aimed to investigate the potential of total RNAseq in improving the characterization of NPM1-mutated AML patients. …”
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RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways. by Jonathan D Stoltzfus, Samuel Minot, Matthew Berriman, Thomas J Nolan, James B Lok

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Exploring the ovine sperm transcriptome by RNAseq techniques. I Effect of seasonal conditions on transcripts abundance. by Irene Ureña, Carmen González, Manuel Ramón, Marta Gòdia, Alex Clop, Jorge H Calvo, Mª Jesús Carabaño, Magdalena Serrano

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RNAseq analysis of the drug jian-yan-ling (JYL) using both in vivo and in vitro models by Xiaobo Zhang, Yunliang Zhai, Dandan Zhang, Chang Che, Yayun Zhang, Quan Li, Xue Zhang, Lingrui Zhao

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Affinity capture of polyribosomes followed by RNAseq (ACAPseq), a discovery platform for protein-protein interactions by Xi Peng, Francesco Emiliani, Philip M Smallwood, Amir Rattner, Hong Lei, Mark F Sabbagh, Jeremy Nathans

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Evaluation of commercially available small RNASeq library preparation kits using low input RNA by Ashish Yeri, Amanda Courtright, Kirsty Danielson, Elizabeth Hutchins, Eric Alsop, Elizabeth Carlson, Michael Hsieh, Olivia Ziegler, Avash Das, Ravi V. Shah, Joel Rozowsky, Saumya Das, Kendall Van Keuren-Jensen

Subjects: “…Small RNASeq…”
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<i>Solanum tuberosum</i> Microtuber Development under Darkness Unveiled through RNAseq Transcriptomic Analysis by Eliana Valencia-Lozano, Lisset Herrera-Isidrón, Jorge Abraham Flores-López, Osiel Salvador Recoder-Meléndez, Aarón Barraza, José Luis Cabrera-Ponce

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P645: Utility of RNAseq in a cohort of undiagnosed congenital myopathy patients: A case series by Casie Genetti, Pamela Barraza-Flores, Wanqing Shao, Sundos Al-Husayni, Courtney French, Shira Rockowitz, Alan Beggs

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Decoding the Regulatory Landscape of Ageing in Musculoskeletal Engineered Tissues Using Genome-Wide DNA Methylation and RNASeq. by Mandy Jayne Peffers, Katarzyna Goljanek-Whysall, John Collins, Yongxiang Fang, Michael Rushton, John Loughlin, Carole Proctor, Peter David Clegg

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Functional Annotation of the Transcriptome of the Pig, Sus scrofa, Based Upon Network Analysis of an RNAseq Transcriptional Atlas by Kim M. Summers, Stephen J. Bush, Chunlei Wu, Andrew I. Su, Charity Muriuki, Emily L. Clark, Heather A. Finlayson, Lel Eory, Lindsey A. Waddell, Richard Talbot, Alan L. Archibald, David A. Hume

“…The same approach was used to identify coexpression clusters within RNAseq data from multiple individual liver and brain samples, highlighting cell type, process, and region-specific gene expression. …”
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Preparation of noninfectious scRNAseq samples from SARS-CoV-2-infected epithelial cells. by Raven M Osborn, Justin Leach, Michelle Zanche, John M Ashton, ChinYi Chu, Juilee Thakar, Stephen Dewhurst, Sonia Rosenberger, Martin Pavelka, Gloria S Pryhuber, Thomas J Mariani, Christopher S Anderson

“…Direct assessment, detection, and quantitative analysis using high throughput methods like single-cell RNA sequencing (scRNAseq) is imperative to understanding the host response to SARS-CoV-2. …”
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Huntington disease oligodendrocyte maturation deficits revealed by single-nucleus RNAseq are rescued by thiamine-biotin supplementation by Ryan G. Lim, Osama Al-Dalahmah, Jie Wu, Maxwell P. Gold, Jack C. Reidling, Guomei Tang, Miriam Adam, David K. Dansu, Hye-Jin Park, Patrizia Casaccia, Ricardo Miramontes, Andrea M. Reyes-Ortiz, Alice Lau, Richard A. Hickman, Fatima Khan, Fahad Paryani, Alice Tang, Kenneth Ofori, Emily Miyoshi, Neethu Michael, Nicolette McClure, Xena E. Flowers, Jean Paul Vonsattel, Shawn Davidson, Vilas Menon, Vivek Swarup, Ernest Fraenkel, James E. Goldman, Leslie M. Thompson

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Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP by Tasos Gogakos, Miguel Brown, Aitor Garzia, Cindy Meyer, Markus Hafner, Thomas Tuschl

“…To address these issues, we developed hydro-tRNAseq, a method based on partial alkaline RNA hydrolysis that generates fragments amenable for sequencing. …”
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RNAseq Analysis of the Response of Arabidopsis thaliana to Fractional Gravity Under Blue-Light Stimulation During Spaceflight by Raúl Herranz, Joshua P. Vandenbrink, Joshua P. Vandenbrink, Alicia Villacampa, Aránzazu Manzano, William L. Poehlman, Frank Alex Feltus, John Z. Kiss, Francisco Javier Medina

“…RNA was extracted from 20 samples for subsequent RNAseq analysis. Transcriptomic analysis was performed using the HISAT2-Stringtie-DESeq pipeline. …”
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TM3’seq: A Tagmentation-Mediated 3’ Sequencing Approach for Improving Scalability of RNAseq Experiments by Luisa F. Pallares, Serge Picard, Julien F. Ayroles

Subjects: “…rnaseq…”
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Feature selection for classification using WGCNA and Spread Sub-Sample for an imbalanced rheumatoid arthritis RNASEQ data by Consolata Gakii, Victoria Mukami, Boaz Too

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