BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation by Venkat Sundar Gadepalli, Hatice Gulcin Ozer, Ayse Selen Yilmaz, Maciej Pietrzak, Amy Webb

Subjects: “…RNAseq…”
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T-RHEX-RNAseq – a tagmentation-based, rRNA blocked, random hexamer primed RNAseq method for generating stranded RNAseq libraries directly from very low numbers of lysed cells by Charlotte Gustafsson, Julia Hauenstein, Nicolai Frengen, Aleksandra Krstic, Sidinh Luc, Robert Månsson

Subjects: “…Stranded RNAseq…”
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Single-cell RNAseq for the study of isoforms—how is that possible? by Ángeles Arzalluz-Luque, Ana Conesa

“…Abstract Single-cell RNAseq and alternative splicing studies have recently become two of the most prominent applications of RNAseq. …”
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RNAseq of Osteoarthritic Synovial Tissues: Systematic Literary Review by Logan Moore, Zui Pan, Marco Brotto

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Dataset from RNAseq analysis of bud differentiation in Ficus carica by Ilaria Marcotuli, Stefania Lucia Giove, Angelica Giancaspro, Agata Gadaleta, Giuseppe Ferrara

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FUCHS—towards full circular RNA characterization using RNAseq by Franziska Metge, Lisa F. Czaja-Hasse, Richard Reinhardt, Chistoph Dieterich

“…To expand our understanding of possible roles of circular RNAs, we propose a new pipeline that could fully characterizes candidate circRNA structure from RNAseq data—FUCHS: FUll CHaracterization of circular RNA using RNA-Sequencing. …”
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RNAseq analysis of α-proteobacterium Gluconobacter oxydans 621H by Angela Kranz, Tobias Busche, Alexander Vogel, Björn Usadel, Jörn Kalinowski, Michael Bott, Tino Polen

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RNAseq-based Transcriptome Analysis of Burkholderia glumae Quorum Sensing by Sunyoung Kim, Jungwook Park, Ji Hyeon Kim, Jongyun Lee, Bongjun Bang, Ingyu Hwang, Young-Su Seo

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Single-Cell and Single-Nucleus RNAseq Analysis of Adult Neurogenesis by Alena Kalinina, Diane Lagace

“…This complexity has been unraveled in part due to single-cell and single-nucleus RNA sequencing (sc-RNAseq and sn-RNAseq) studies that have focused on adult neurogenesis. …”
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Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra by Odile Rogier, Aurélien Chateigner, Souhila Amanzougarene, Marie-Claude Lesage-Descauses, Sandrine Balzergue, Véronique Brunaud, José Caius, Ludivine Soubigou-Taconnat, Véronique Jorge, Vincent Segura

“…Results We have devised a bioinformatics pipeline to call and type SNPs from RNAseq reads and applied it to P. nigra transcriptomic data. …”
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Development of computational tools for variant calling in single-cell RNAseq by Zielińska, KA

“…Eventually, single-cell RNAseq could provide an explanation of mechanisms that lead to the ultimate transformation of healthy tissues into cancerous lesions. …”

Single-cell RNAseq profiling of early heart developmental physiology by Miranda, AMA, Tyser, RCV, Riley, PR, Scialdone, A, Marioni, J, Srinivas, S

Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants by Maria Petronella Human, Dave Kenneth Berger, Bridget Genevieve Crampton

“…It also aimed to identify race-specific differences in gene expression. RNAseq of maize seedlings inoculated with a race 13N or 23N E. turcicum isolate was conducted before inoculation and at 2, 5, 7, and 13 days post-inoculation (dpi). …”
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Sparsely-connected autoencoder (SCA) for single cell RNAseq data mining by Luca Alessandri, Francesca Cordero, Marco Beccuti, Nicola Licheri, Maddalena Arigoni, Martina Olivero, Maria Flavia Di Renzo, Anna Sapino, Raffaele Calogero

“…Abstract Single-cell RNA sequencing (scRNAseq) is an essential tool to investigate cellular heterogeneity. …”
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The Population Genomics of Sunflowers and Genomic Determinants of Protein Evolution Revealed by RNAseq by Loren H. Rieseberg, Nolan C. Kane, Brook T. Moyers, Sébastien Renaut, Christopher J. Grassa

Subjects: “…RNAseq…”
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RNAseq based variant dataset in a black poplar association panel by Odile Rogier, Aurélien Chateigner, Marie-Claude Lesage-Descauses, Claire Mandin, Véronique Brunaud, José Caius, Ludivine Soubigou-Taconnat, José Almeida-Falcon, Catherine Bastien, Vanina Benoit, Guillaume Bodineau, Nathalie Boizot, Corinne Buret, Jean-Paul Charpentier, Annabelle Déjardin, Alain Delaunay, Régis Fichot, Véronique Laine Prade, Françoise Laurans, Isabelle Le Jan, Anne-Laure Legac, Stéphane Maury, Mesfin Nigussie Gebreselassie, Patrick Poursat, Céline Ridel, Léopoldo Sanchez, Véronique Jorge, Vincent Segura

“…More than 99% of these positions are annotated and 98.8% are located on the 19 chromosomes of the P. trichocarpa reference genome. The raw RNAseq sequences are available at the NCBI Sequence Read Archive SPR188754 and the variant dataset at the Recherche Data Gouv repository under https://doi.org/10.15454/8DQXK5 .…”
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RNAseq analysis of hippocampal microglia after kainic acid-induced seizures by Dale B. Bosco, Jiaying Zheng, Zhiyan Xu, Jiyun Peng, Ukpong B. Eyo, Ke Tang, Cheng Yan, Jun Huang, Lijie Feng, Gongxiong Wu, Jason R. Richardson, Hui Wang, Long-Jun Wu

“…As such, we utilized RNAseq analysis upon microglia isolated from the hippocampus to determine expression pattern alterations following kainic acid induced seizure. …”
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Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data by Jonathan A. Griffiths, Antonio Scialdone, John C. Marioni

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Measuring the transcriptome-wide effects of aging on murine adipocytes using RNAseq by Aurore De Cauwer, Angélique Pichot, Anne Molitor, Tristan Stemmelen, Raphael Carapito, Seiamak Bahram, Philippe Georgel

Subjects: “…RNAseq…”
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Nanopore long-read RNAseq reveals transcriptional variations in citrus species by Xiao-Li Hu, Xiao-Li Hu, Congjun You, Congjun You, Kaikai Zhu, Xiaolong Li, Xiaolong Li, Jinli Gong, Jinli Gong, Haijie Ma, Haijie Ma, Xuepeng Sun, Xuepeng Sun

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