URMAP, an ultra-fast read mapper by Robert Edgar

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Nuclear Orthologs Derived from Whole Genome Sequencing Indicate Cryptic Diversity in the <i>Bemisia tabaci</i> (Insecta: Aleyrodidae) Complex of Whiteflies by Robert S. de Moya, Judith K. Brown, Andrew D. Sweet, Kimberly K. O. Walden, Jorge R. Paredes-Montero, Robert M. Waterhouse, Kevin P. Johnson

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A new hash function and its use in read mapping on genome by Farzaneh Salari, Fatemeh Zare Mirakabad, Mehdi Sadeghi

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Context-aware seeds for read mapping by Hongyi Xin, Mingfu Shao, Carl Kingsford

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Massively parallel read mapping on GPUs with the q-group index and PEANUT by Johannes Köster, Sven Rahmann

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StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs by Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo

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Maptcha: an efficient parallel workflow for hybrid genome scaffolding by Oieswarya Bhowmik, Tazin Rahman, Ananth Kalyanaraman

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Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants by Claudius Grehl, Claudius Grehl, Marc Wagner, Ioana Lemnian, Ioana Lemnian, Bruno Glaser, Ivo Grosse, Ivo Grosse

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Whisper2: Indel-sensitive short read mapping by Sebastian Deorowicz, Adam Gudyś

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Fast and efficient short read mapping based on a succinct hash index by Haowen Zhang, Yuandong Chan, Kaichao Fan, Bertil Schmidt, Weiguo Liu

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ESKEMAP: exact sketch-based read mapping by Tizian Schulz, Paul Medvedev

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Strobealign: flexible seed size enables ultra-fast and accurate read alignment by Kristoffer Sahlin

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The need for masked genomes in gymnosperms by Pengkai Zhu, Tianyou He, Yushan Zheng, Lingyan Chen

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From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures by Mohammed Alser, Joel Lindegger, Can Firtina, Nour Almadhoun, Haiyu Mao, Gagandeep Singh, Juan Gomez-Luna, Onur Mutlu

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Fulgor: a fast and compact k-mer index for large-scale matching and color queries by Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro

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Improving RNA-Seq precision with MapAl by Paweł P Łabaj, Bryan E Linggi, H Steven eWiley, David P Kreil, David P Kreil

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RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment by Joel Lindegger, Can Firtina, Nika Mansouri Ghiasi, Mohammad Sadrosadati, Mohammed Alser, Onur Mutlu

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Studying Smaller and Neglected Organisms in Modern Evolutionary Venomics Implementing RNASeq (Transcriptomics)—A Critical Guide by Björn Marcus von Reumont

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Phylogeny and species delimitation of ciliates in the genus Spirostomum (class Heterotrichea) using single-cell transcriptomes by Shahed Uddin Ahmed Shazib, Auden Cote-L’Heureux, Ragib Ahsan, Sergio A. Muñoz-Gómez, JunMo Lee, Laura A. Katz, Mann Kyoon Shin

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Distributed gene clinical decision support system based on cloud computing by Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Chao Wang, Xuehai Zhou

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