Single-cell exome sequencing reveals multiple subclones in metastatic colorectal carcinoma by Jie Tang, Kailing Tu, Keying Lu, Jiaxun Zhang, Kai Luo, Haoxuan Jin, Lei Wang, Lie Yang, Weiran Xiao, Qilin Zhang, Xiaoling Liu, Xin yi Ge, Guibo Li, Zongguang Zhou, Dan Xie

Subjects: “…Colorectal cancer, Single-cell DNA sequencing, Tumour metastasis…”
Get full text

SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data by Collin Giguere, Harsh Vardhan Dubey, Vishal Kumar Sarsani, Hachem Saddiki, Shai He, Patrick Flaherty

Subjects: “…Single-cell DNA sequencing…”
Get full text

Mugen-UMAP: UMAP visualization and clustering of mutated genes in single-cell DNA sequencing data by Teng Li, Yiran Zou, Xianghan Li, Thomas K. F. Wong, Allen G. Rodrigo

Subjects: Get full text

Inferring single-cell copy number profiles through cross-cell segmentation of read counts by Furui Liu, Fangyuan Shi, Zhenhua Yu

Subjects: “…Single-cell DNA sequencing…”
Get full text

Fifty Generations of Amitosis: Tracing Asymmetric Allele Segregation in Polyploid Cells with Single-Cell DNA Sequencing by Valerio Vitali, Rebecca Rothering, Francesco Catania

Subjects: Get full text

Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing by Joanna Hård, Ezeddin Al Hakim, Marie Kindblom, Åsa K. Björklund, Bengt Sennblad, Ilke Demirci, Marta Paterlini, Pedro Reu, Erik Borgström, Patrik L. Ståhl, Jakob Michaelsson, Jeff E. Mold, Jonas Frisén

Subjects: “…Single-cell DNA sequencing…”
Get full text

scHaplotyper: haplotype construction and visualization for genetic diagnosis using single cell DNA sequencing data by Zhiqiang Yan, Xiaohui Zhu, Yuqian Wang, Yanli Nie, Shuo Guan, Ying Kuo, Di Chang, Rong Li, Jie Qiao, Liying Yan

Subjects: “…Single cell DNA sequencing…”
Get full text

Methods for copy number aberration detection from single-cell DNA-sequencing data by Xian F. Mallory, Mohammadamin Edrisi, Nicholas Navin, Luay Nakhleh

Subjects: Get full text

ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model by Palash Sashittal, Haochen Zhang, Christine A. Iacobuzio-Donahue, Benjamin J. Raphael

Subjects: Get full text

Comprehensive description of the current breast cancer microenvironment advancements via single-cell analysis by Xueqi Yan, Yinghong Xie, Fan Yang, Yijia Hua, Tianyu Zeng, Chunxiao Sun, Mengzhu Yang, Xiang Huang, Hao Wu, Ziyi Fu, Wei Li, Shiping Jiao, Yongmei Yin

Subjects: Get full text

HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling by Jan Otoničar, Olga Lazareva, Jan-Philipp Mallm, Milena Simovic-Lorenz, George Philippos, Pooja Sant, Urja Parekh, Linda Hammann, Albert Li, Umut Yildiz, Mikael Marttinen, Judith Zaugg, Kyung Min Noh, Oliver Stegle, Aurélie Ernst

Subjects: “…Single Cell DNA sequencing…”
Get full text

NestedBD: Bayesian inference of phylogenetic trees from single-cell copy number profiles under a birth-death model by Yushu Liu, Mohammadamin Edrisi, Zhi Yan, Huw A Ogilvie, Luay Nakhleh

Subjects: Get full text

Single-Cell DNA Sequencing Reveals an Evolutionary Pattern of CHIP in Transplant Eligible Multiple Myeloma Patients by Enrica Borsi, Ilaria Vigliotta, Andrea Poletti, Gaia Mazzocchetti, Vincenza Solli, Luca Zazzeroni, Marina Martello, Silvia Armuzzi, Barbara Taurisano, Ajsi Kanapari, Ignazia Pistis, Elena Zamagni, Lucia Pantani, Serena Rocchi, Katia Mancuso, Paola Tacchetti, Ilaria Rizzello, Simonetta Rizzi, Elisa Dan, Barbara Sinigaglia, Michele Cavo, Carolina Terragna

Subjects: Get full text

Parsimonious Clone Tree Integration in cancer by Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir

Subjects: Get full text

Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors by Leah L. Weber, Mohammed El-Kebir

Subjects: Get full text

Novel scheme for defining the clinical implications of TP53 mutations in myeloid neoplasia by Waled Bahaj, Tariq Kewan, Carmelo Gurnari, Arda Durmaz, Ben Ponvilawan, Ishani Pandit, Yasuo Kubota, Olisaemeka D. Ogbue, Misam Zawit, Yazan Madanat, Taha Bat, Suresh K. Balasubramanian, Hussein Awada, Ramsha Ahmed, Minako Mori, Manja Meggendorfer, Torsten Haferlach, Valeria Visconte, Jaroslaw P. Maciejewski

Subjects: Get full text

Single-Cell Sequencing: Ariadne’s Thread in the Maze of Acute Myeloid Leukemia by Immacolata Redavid, Maria Rosa Conserva, Luisa Anelli, Antonella Zagaria, Giorgina Specchia, Pellegrino Musto, Francesco Albano

Subjects: “…single-cell DNA sequencing…”
Get full text

Single-Cell DNA Sequencing and Immunophenotypic Profiling to Track Clonal Evolution in an Acute Myeloid Leukemia Patient by María García-Álvarez, Ana Yeguas, Cristina Jiménez, Alejandro Medina-Herrera, Verónica González-Calle, Montserrat Hernández-Ruano, Rebeca Maldonado, Irene Aires, Cristina Casquero, Inmaculada Sánchez-Villares, Ana Balanzategui, María Eugenia Sarasquete, Miguel Alcoceba, María Belén Vidriales, Marcos González-Díaz, Ramón García-Sanz, María Carmen Chillón

Subjects: Get full text

scAbsolute: measuring single-cell ploidy and replication status by Michael P. Schneider, Amy E. Cullen, Justina Pangonyte, Jason Skelton, Harvey Major, Elke Van Oudenhove, Maria J. Garcia, Blas Chaves Urbano, Anna M. Piskorz, James D. Brenton, Geoff Macintyre, Florian Markowetz

Subjects: “…Single-cell DNA sequencing…”
Get full text

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data by Senbai Kang, Nico Borgsmüller, Monica Valecha, Jack Kuipers, Joao M. Alves, Sonia Prado-López, Débora Chantada, Niko Beerenwinkel, David Posada, Ewa Szczurek

Subjects: “…Single-cell DNA sequencing…”
Get full text