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Efficient computation of spaced seed hashing with block indexing
Published 2018-11-01Subjects: “…Spaced seeds…”
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PerFSeeB: designing long high-weight single spaced seeds for full sensitivity alignment with a given number of mismatches
Published 2023-10-01Subjects: “…Spaced seeds…”
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Global, highly specific and fast filtering of alignment seeds
Published 2022-06-01Subjects: “…Spaced seeds…”
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gpALIGNER: A Fast Algorithm for Global Pairwise Alignment of DNA Sequences
Published 2011-06-01Subjects: Get full text
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Effect of plant density on growth and yield attributes of common bean (Phaseolus vulgaris L.) genotypes
Published 2020-06-01Subjects: “…agro-morphological traits; common bean; plant density; plant spacing; seed yield; yield components…”
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Tract specific reproducibility of tractography based morphology and diffusion metrics.
Published 2012-01-01“…Tractography is based on common space seed and target regions and performed for several major white matter tracts. …”
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Rocket Science: The Effect of Spaceflight on Germination Physiology, Ageing, and Transcriptome of <i>Eruca sativa</i> Seeds
Published 2020-04-01“…Here we investigated the physiological and molecular mechanisms underpinning the spaceflight effects on dry seeds. We found that ‘Space’ seed germination vigor was reduced, and ageing sensitivity increased, but the spaceflight did not compromise seed viability and the development of normal seedlings. …”
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An empirical study of choosing efficient discriminative seeds for oligonucleotide design
Published 2009-12-01“…As the result, the spaced seed is recorded as the most efficient discriminative seed for oligo design. …”
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Effect of Row Spacing and Seeding Rate on Forage Yield Local Alfalfa, c.v. Gara Yonjeh (Medicago sativa)
Published 2011-01-01“…Interactions of row space × seeding rate were not significant. Means comparisons showed that yield of A1B3 entry (row space=25 cm, seed rate=30 kg/ha) with 3135 kg/ha dry forage and 5653 kg/ha wet forage was higher than the yields of other entries. …”
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Languages of lossless seeds
Published 2014-05-01“…In this paper, we study theoretical properties of lossless seeds, i.e., spaced seeds having full sensitivity. We prove that lossless seeds coincide with languages of certain sofic subshifts, hence they can be recognized by finite automata. …”
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Optimization of Spaced K-mer Frequency Feature Extraction using Genetic Algorithms for Metagenome Fragment Classification
Published 2018-09-01“…This approach was adopted from the concept of spaced seeds in PatternHunter. The use of spaced k-mers could reduce the size of the k-mer frequency feature's dimension. …”
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Improved hit criteria for DNA local alignment
Published 2004-10-01“…Second, we introduce <it>transition-constrained seeds </it>that extend spaced seeds by the possibility of distinguishing transition and transversion mismatches. …”
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Responses of Canola to Different Row and Plant Spacings
Published 2000-06-01“…and TDM over 15 or 20 cm plant spacing. Seed and oil yield was significantly increased in first row spacing compared with 45 or 60 cm row spacing in both seasons. …”
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Effective magnetic monopole mechanism for localized electron pairing in HTS
Published 2022-09-01“…The pairs localized near the monopoles form real-space seeds for superconducting droplets and strong coupling is due to the topological Dirac quantization condition. …”
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Analysis of FARO 44 Rice Technologies Adoption among Farmers in Nigeria
Published 2020-02-01“…Technologies such as improved seed recommended spacing; seed per hole; use of granular fertilizer were adopted by male respondents. …”
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Universal seeds for cDNA-to-genome comparison
Published 2008-01-01“…<p>Abstract</p> <p>Background</p> <p>To meet the needs of gene annotation for newly sequenced organisms, optimized spaced seeds can be implemented into cross-species sequence alignment programs to accurately align gene sequences to the genome of a related species. …”
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Partial Differential Equations for Cereal Seeds Distribution
Published 2021-01-01“…Therefore, there are two different partial differential equations of cereal seed distribution-distinction is made between the longitudinal spacing (seeds in a row), and transverse distance (between two rows), as well as the sowing depth. …”
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