A scheduling algorithm for computational grids that minimizes centralized processing in genome assembly of NGS data by Jakelyne eLima, Louise Teixeira Cerdeira, Erick eBol, Maria Paula Cruz Schneider, Vasco Ariston De Carvalho Azevedo, Artur eSilva, Antônio Jorge Gomes Abelém

“…We run ABySS with and without the algorithm we developed in the grid simulator SimGrid. …”
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Revisiting Pessoa's Book of Disquiet by Brown, Susan Margaret

“…Pessoa's Geometry of the Abyss: Modernity and the Book of Disquiet. London: Legenda.…”
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Language and literature: some dialogic trodden ways* Language and literature: some dialogic trodden ways* by Josalba Ramalho Vieira

“…In one of Steven Spielberg’s films, Indiana Jones (Harrison Ford) remembers that in order to cross a dangerous abyss he should look for solutions within the problems themselves and, as a result, decides to cross it even if there was no bridge whatsoever. …”
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Parallelized short read assembly of large genomes using de Bruijn graphs by Liu Yongchao, Schmidt Bertil, Maskell Douglas L

“…Compared to ABySS, PASHA achieves competitive assembly quality with faster execution speed on the same compute resources, yielding an NG50 <it>contig </it>size of 503 with the longest correct <it>contig </it>size of 18,252, and an NG50 <it>scaffold </it>size of 2,294. …”
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Optimization of de novo short read assembly of seabuckthorn (Hippophae rhamnoides L.) transcriptome. by Rajesh Ghangal, Saurabh Chaudhary, Mukesh Jain, Ram Singh Purty, Prakash Chand Sharma

“…At our hand, assembly of non-redundant short reads following a two-step procedure was found to be the best considering various assembly quality parameters. Initially, ABySS tool was used following an additive k-mer approach. …”
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¯\_(ツ)_/¯ ENG by Marian Garrido Herrojo

“…Nothing matters in the virtual abyss.…”
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DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI by Schmidt Bertil, Liu Yongchao, Maskell Douglas L

“…Furthermore, when combined with Velvet and ABySS, the resulting DecGPU-Velvet and DecGPU-ABySS assemblers demonstrate the potential of our algorithm to improve <it>de novo </it>assembly quality for <it>de</it>-<it>Bruijn</it>-graph-based assemblers.…”
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GOD AND DEVIL IN A LAND SEARCHING THE SUN by Robson Dutra

“…Therefore, from shadows and abyss, secrets and magic on, we consider Mozambican historical and social le­gacy, her tradition and becoming. …”
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Michael Wigglesworth and the Scope of Puritan Psychomachia by Poenaru Andreea

“…Doomsday, as he was called, kept a diary that reveals the abyss that a Puritan soul could fall into while struggling for perfection, which was unbreakable communion with God.…”
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Cosa fare del male che si è guardato in faccia? by Aharon Appelfeld

“…Literature – differently form philosophy, historiography, and all other disciplines – “has the capacity to lead the atrocious experience back into the circle of life, to move it from the category of history to the category of art, because only art has the power to get the suffering out of the abyss”.…”
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Art, Science, and Technology of Human Sexuality by Beibei Song

“…In Spring 2017, Abyss Creations, a 20-year old manufacturer of hyper-realistic sex dolls (trade-named “RealDoll”) with a loyal customer base, launched an artificial intelligence app (named “Harmony”) to augment the dolls’ already life-like bodies, giving them customizable personalities and allowing them to flirt and converse with their owners[...]…”
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De la robustesse du gouvernement représentatif face à la contestation. Réflexions à partir du cas argentin by Américo Mariani

“…Representative government is always described as lacking, weak and so to speak on the edge of the abyss. Through analysis of the consequences of the social movements of the 2001 in Argentina, this article thinks the robustness of representative government. …”
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Becoming Béla Tarr’s Bêtes, or How to Stop Being Afraid of Ceasing to Be a Human Being by James Martell

“…This essay looks at the current state of the world (disdainful gesture, disgustedly) and with Tarrian eyes, tries to question our speeds, and to see the bottomless abyss that Nietzsche, Deleuze, and others proposed to us as our only living escape. …”
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Public Communication of Science and Cultural Consumption. Scientific Information as an Independent Element by Patricia Castellanos Pineda

“…Nowadays, governments, universities, research centers and other institutions, like museums, invest its resources, human and financial, in public understanding of science. However, the abyss and indifference towards science seem not decrease or doing it slowly. …”
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Interruption, beyond continuity by Raúl Antelo

“…Our starting point is his critical production, particularly about Theatre and especially about Rafael Spregelburd. In an abyss like manner Rodríguez Carranza theorizes about Theatre and Literature as practices that interrupt continuity: the continuity of fiction, that of representation and presentation models and that of the foundation and dissolution of myth.…”
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Fish Hydrolysate Supplementation Prevents Stress-Induced Dysregulation of Hippocampal Proteins Relative to Mitochondrial Metabolism and the Neuronal Network in Mice by Julie Le Faouder, Bastien Arnaud, Régis Lavigne, Céline Lucas, Emmanuelle Com, Elodie Bouvret, Anne-Laure Dinel, Charles Pineau

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Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. by Ratan Chopra, Gloria Burow, Andrew Farmer, Joann Mudge, Charles E Simpson, Mark D Burow

“…Also, on mapping the raw reads to each of the assemblies generated, Trinity had a high success rate in assembling sequences compared to both TransAByss and SOAPdenovo-Trans. De novo assembly of OLin had a greater number of contigs (67,098) and longer contig length (N50 = 1,641) compared to the Tifrunner TSA. …”
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Taxonomic and Functional Compositions Impacted by the Quality of Metatranscriptomic Assemblies by Maggie C. Y. Lau, Rachel L. Harris, Youmi Oh, Min Joo Yi, Aida Behmard, Tullis C. Onstott

“…These assemblies were constructed from total, non-coding, and coding reads using five de novo transcriptomic assemblers (Trans-ABySS, Trinity, Oases, IDBA-tran, and Rockhopper). …”
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Patella vulgata and Spirobranchus (Pomatoceros) lamarcki genonme and transcriptome assemblies. by Shimeld, S

“…Geographical location or coverage of the data: Biological samples used to generate all datasets were collected from Tinside beach, Plymouth, UK Multiple software packages (SOAP, ABYSS, VELVET) have been used to build these assemblies. …”

The Case of the Libyan HIV-1 Outbreak by Bagasra O, Alsayari M

“…Politicizing a scientific matter always leads to a dangerous abyss. The only way to do so is to try to comprehend what exactly happened based on scientific evidence regardless of who did it and why!…”
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