MYCOBACTERIUM TUBERCULOSIS GENOME INDEL AND CRISPRI HIGH- THROUGHPUT SCREENING BY MANIPULATING ITS ENDOGENOUS TYPE IIIA CRIPSR by M.A. Naeem, K. Rahman, W. Ahmad, Z. Habib

“…Guide RNA for the target gene was designed and homology- directed repair (HDR) sequence containing GFP was employed for gene insertion- deletion (indel). For gene knock-down (RNA interference) mechanism was identified by RIP-qPCR. …”
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Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data. by Ning Wang, Vladislav Lysenkov, Katri Orte, Veli Kairisto, Juhani Aakko, Sofia Khan, Laura L Elo

“…Insertions and deletions (indels) in human genomes are associated with a wide range of phenotypes, including various clinical disorders. …”
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Development of InDels markers for the identification of cytoplasmic male sterility in Sorghum by complete chloroplast genome sequences analysis by Myeong-Eun Choe, Ji-Young Kim, Rizwana Begum Syed Nabi, Sang-Ik Han, Kwang-Soo Cho

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Investigating structural variant, indel and single nucleotide polymorphism differentiation between locally adapted Atlantic salmon populations by Laurie Lecomte, Mariann Árnyasi, Anne‐Laure Ferchaud, Matthew Kent, Sigbjørn Lien, Kristina Stenløkk, Florent Sylvestre, Louis Bernatchez, Claire Mérot

“…We first catalogued polymorphism using a hybrid SV characterization approach pairing both short‐ (16X) and long‐read sequencing (20X) for variant discovery with graph‐based genotyping of SVs across 60 salmon genomes, along with characterization of SNPs and small indels from short reads. We thus identified 115,907 SVs, 8,777,832 SNPs and 1,089,321 short indels, with SVs covering 4.8 times more base pairs than SNPs. …”
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Association between an indel polymorphism within the distal promoter of EGLN2 and cancer risk: An updated meta‐analysis by Shulong Zhang, Kaihua Zhu, Zuoliang Zhang, Hui Wang, Xiaolong Wang

“…Abstract Background The association between a 4‐bp indel polymorphism (rs10680577) within the distal promoter of EGLN2 and cancer risk has been investigated by several case–control studies in recent years, but investigation results were inconsistent. …”
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High-Throughput Sequencing of Phage Display Libraries Reveals Parasitic Enrichment of Indel Mutants Caused by Amplification Bias by Sander Plessers, Vincent Van Deuren, Rob Lavigne, Johan Robben

“…This revealed enriched genotypes with small indels and concomitant doubtful amino acid motifs within the FTO library. …”
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MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning by Chang Li, Degui Zhi, Kai Wang, Xiaoming Liu

“…Using context annotations and deep learning methods, we present pathogenicity prediction models, MetaRNN and MetaRNN-indel, to help identify and prioritize rare nonsynonymous single nucleotide variants (nsSNVs) and non-frameshift insertion/deletions (nfINDELs). …”
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A Comprehensive Review of Indel Detection Methods for Identification of Zebrafish Knockout Mutants Generated by Genome-Editing Nucleases by Blake Carrington, Kevin Bishop, Raman Sood

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Increased Frequency of Indels in Hypervariable Regions of SARS-CoV-2 Proteins—A Possible Signature of Adaptive Selection by Arghavan Alisoltani, Lukasz Jaroszewski, Mallika Iyer, Arash Iranzadeh, Adam Godzik

Subjects: “…indels…”
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An interpretation of the genetic polymorphism and population genetic background of Ankang Han population via a novel InDel panel by Wei Cui, Xiaoye Jin, Yating Fang, Qiong Lan, Jiangwei Lan, Man Chen, Shuyan Mei, Tong Xie, Bofeng Zhu

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Prevalence of BRCA homopolymeric indels in an ION Torrent-based tumour-to-germline testing workflow in high-grade ovarian carcinoma by Jacopo Azzollini, Luca Agnelli, Elena Conca, Tommaso Torelli, Adele Busico, Iolanda Capone, Marta Angelini, Elena Tamborini, Federica Perrone, Andrea Vingiani, Daniele Lorenzini, Bernard Peissel, Giancarlo Pruneri, Siranoush Manoukian

“…The low sensitivity for indels at loci with sequences of identical bases (homopolymers) of ion semiconductor-based sequencing techniques represents a well-known limitation, but the prevalence of indels overlooked by these techniques in high-risk populations has not been investigated. …”
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Relationships between the Mini-InDel Variants within the Goat <i>CFAP43</i> Gene and Body Traits by Fang Mi, Xianfeng Wu, Zhen Wang, Ruolan Wang, Xianyong Lan

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A Scalable and Robust Chloroplast Genotyping Solution: Development and Application of SNP and InDel Markers in the Maize Chloroplast Genome by Rui Wang, Yang Yang, Hongli Tian, Hongmei Yi, Liwen Xu, Yuanda Lv, Jianrong Ge, Yikun Zhao, Lu Wang, Shiliang Zhou, Fengge Wang

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Genome-Wide Discovery of InDel Markers in Sesame (<i>Sesamum indicum</i> L.) Using ddRADSeq by Sibel Kizil, Merve Basak, Birgul Guden, Hilal Sule Tosun, Bulent Uzun, Engin Yol

“…On average, InDels of at least 2 bp in length had a frequency of 2.99 InDels/Mb. …”
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An Indel Polymorphism in the MtnA 3' Untranslated Region Is Associated with Gene Expression Variation and Local Adaptation in Drosophila melanogaster. by Ana Catalán, Amanda Glaser-Schmitt, Eliza Argyridou, Pablo Duchen, John Parsch

“…Insertions and deletions (indels) are a major source of genetic variation within species and may result in functional changes to coding or regulatory sequences. …”
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In Silico Mining and Characterization of High-Quality SNP/Indels in Some Agro-Economically Important Species Belonging to the Family Euphorbiaceae by Surojit Sen, Sunayana Rathi, Jagajjit Sahu, Subhash C. Mandal, Supratim Ray, Petr Slama, Shubhadeep Roychoudhury

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InDel and CNV within the <i>AKAP13</i> Gene Revealing Strong Associations with Growth Traits in Goat by Xiaoyue Song, Yangyang Bai, Rongrong Yuan, Haijing Zhu, Xianyong Lan, Lei Qu

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Study on the Association between <i>LRRC8B</i> Gene InDel and Sheep Body Conformation Traits by Jiaqiang Zhang, Zhansaya Toremurat, Yilin Liang, Jie Cheng, Zhenzhen Sun, Yangming Huang, Junxia Liu, BUREN Chaogetu, Gang Ren, Hong Chen

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Genome-wide SNP and InDel analysis of three Philippine mango species inferred from whole-genome sequencing by Cris Q. Cortaga, John Albert P. Lachica, Darlon V. Lantican, Eureka Teresa M. Ocampo

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Large Fragment InDels Reshape Genome Structure of Porcine Alveolar Macrophage 3D4/21 Cells by Xiaolong Li, Xiaoqian Zhang, Yandong Luo, Ru Liu, Yan Sun, Shuhong Zhao, Mei Yu, Jianhua Cao

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