scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing by Kejie Li, Yu H. Sun, Zhengyu Ouyang, Soumya Negi, Zhen Gao, Jing Zhu, Wanli Wang, Yirui Chen, Sarbottam Piya, Wenxing Hu, Maria I. Zavodszky, Hima Yalamanchili, Shaolong Cao, Andrew Gehrke, Mark Sheehan, Dann Huh, Fergal Casey, Xinmin Zhang, Baohong Zhang

“…Users have the option to run it on a local computer with a Linux/Unix system including MacOS, or interact with SGE/Slurm schedulers on high-performance computing (HPC) clusters.…”
Get full text

CometAnalyser: A user-friendly, open-source deep-learning microscopy tool for quantitative comet assay analysis by Attila Beleon, Sara Pignatta, Chiara Arienti, Antonella Carbonaro, Peter Horvath, Giovanni Martinelli, Gastone Castellani, Anna Tesei, Filippo Piccinini

“…It works with Windows, Macintosh, and UNIX-based systems. Source code, standalone versions, user manual, sample images, video tutorial and further documentation are freely available at: https://sourceforge.net/p/cometanalyser.…”
Get full text

Data-constrained Solar Modeling with GX Simulator by Gelu M. Nita, Gregory D. Fleishman, Alexey A. Kuznetsov, Sergey A. Anfinogentov, Alexey G. Stupishin, Eduard P. Kontar, Samuel J. Schonfeld, James A. Klimchuk, Dale E. Gary

“…Its object-based modular architecture, which runs on Windows, Mac, and Unix/Linux platforms, offers the ability to either import 3D density and temperature distribution models, or to assign numerically defined coronal or chromospheric temperatures and densities, or their distributions, to each individual voxel. …”
Get full text

GRETNA: a graph theoretical network analysis toolbox for imaging connectomics by Jinhui eWang, Jinhui eWang, Jinhui eWang, Xindi eWang, Mingrui eXia, Xuhong eLiao, Alan eEvans, Yong eHe, Yong eHe

“…The GRETNA contains several key features as follows: (i) an open-source, Matlab-based, cross-platform (Windows and UNIX OS) package with a graphical user interface; (ii) allowing topological analyses of global and local network properties with parallel computing ability, independent of imaging modality and species; (iii) providing flexible manipulations in several key steps during network construction and analysis, which include network node definition, network connectivity processing, network type selection and choice of thresholding procedure; (iv) allowing statistical comparisons of global, nodal and connectional network metrics and assessments of relationship between these network metrics and clinical or behavioral variables of interest; and (v) including functionality in image preprocessing and network construction based on resting-state functional MRI (R-fMRI) data. …”
Get full text

Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms by Gao, Connie W, Allen, Joshua W, Green, William H, West, Richard H

“…Computer: Windows, Ubuntu, and Mac OS computers with relevant compilers. Operating system: Unix/Linux/Windows. RAM: 1 GB minimum, 16 GB or more for larger simulations Classification: 16.12. …”
Get full text

Tectonic evolution of the Thakkahola Graben and Dhaulagiri Himalaya, Central Nepal by Hurtado, José Miguel, 1974-

Get full text

DIE REALITEIT VAN TRANSKULTURELE VERPLEGING: 'n ETIESE PERSPEKTIEF by Martha J Oosthuizen

“…Daar is verder ook gebruik gemaak van die UNIX-stelsel vir die ontieding van enkele vrae. Data is verder verwerk met behulp van 'n variansie-analise (ANOVA SS). …”
Get full text

Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework by Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee

“…We compare a number of existing in-memory data placing and sharing techniques like ramDisk and Unix pipes to show how columnar in-memory data representation outperforms both. …”
Get full text

Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms by Gao, Connie W., Allen, Joshua W., Green, William H., West, Richard H.

“…Computer: Windows, Ubuntu, and Mac OS computers with relevant compilers. Operating system: Unix/Linux/Windows. RAM: 1 GB minimum, 16 GB or more for larger simulations Classification: 16.12. …”
Get full text

wannier90: A tool for obtaining maximally-localised Wannier functions by Mostofi, A, Yates, JR, Lee, Y, Souza, I, Vanderbilt, D, Marzari, N

“…Operating system: Linux, Windows, Solaris, AIX, Tru64 Unix, OSX. RAM: 10 MB. Word size: 32 or 64. Classification: 7.3. …”

The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment by Benjamin J. Tully, Joy Buongiorno, Ashley B. Cohen, Jacob A. Cram, Arkadiy I. Garber, Sarah K. Hu, Arianna I. Krinos, Philip T. Leftwich, Alexis J. Marshall, Ella T. Sieradzki, Daan R. Speth, Elizabeth A Suter, Christopher B. Trivedi, Luis E. Valentin-Alvarado, JL Weissman

“…The major topics included the Unix terminal interface, R and Python programming languages, amplicon analysis, metagenomics, functional protein annotation, transcriptome analysis, network science, and population genetics and comparative genomics. …”
Get full text

BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology by Basil B. Xavier, Mohamed Mysara, Mattia Bolzan, Bruno Ribeiro-Gonçalves, Blaise T.F. Alako, Peter Harrison, Christine Lammens, Samir Kumar-Singh, Herman Goossens, João A. Carriço, Guy Cochrane, Surbhi Malhotra-Kumar

“…BacPipe is integrated in EBI-SELECTA, a project-specific portal (H2020-COMPARE), and is available as an independent docker image that can be used across Windows- and Unix-based systems. BacPipe offers a fully automated “one-stop” bacterial WGS analysis pipeline to overcome the major hurdle of WGS data analysis in hospitals and public-health and for infection control monitoring. : Biological Sciences Research Methodologies; Microbiology; Sequence Analysis Subject Areas: Biological Sciences Research Methodologies, Microbiology, Sequence Analysis…”
Get full text

Criação de um CD Linux autoinicializável com ferramentas educacionais by Renato de Oliveira Diogo, Marcos Antônio Cavenaghi, Roberta Ulson Spolon, Aparecido Nilceu Marana

“…Introdução: Em 1984, foi lançado o projeto GNU, um sistema operacional com a intenção de ser completo e livre, sendo compatível com o UNIX e com suporte a processadores x86. Por algumas dificuldades encontradas no projeto, atualmente este usa como núcleo do sistema o Linux, cujo inicio do projeto foi em 1991 pelo estudante finlandês Linus Torvalds, sendo popularmente conhecido como GNU/Linux. …”
Get full text

An analysis of service oriented architectures by Ramaratnam, Rajiv

Get full text

MCODE, Version 2.2: An MCNP-ORIGEN DEpletion Program by Xu, Z., Hejzlar, Pavel

“…As a stand-alone code written in ANSI C, MCODE-2.2 is portable between Windows personal computers (PC’s) and UNIX/Linux machines. There are three utility programs in MCODE-2.2: (1) preproc to pre-process MCNP/ORIGEN libraries; (2) mcode as the console to run steady-state burnup/decay calculations; and (3) mcodeout to collect results from scattered data files under temporary directory and produce a detailed output. …”
Get full text

An updated version of wannier90: A tool for obtaining maximally-localised Wannier functions by Mostofi, A, Yates, JR, Pizzi, G, Lee, Y, Souza, I, Vanderbilt, D, Marzari, N

“…Operating system: Linux, Windows, Solaris, AIX, Tru64 Unix, OSX. Has the code been vectorised or parallelized?…”

Current Developments in the Research Data Repository RADAR by Felix Bach, Kerstin Soltau, Sandra Göller, Christian Bonatto Minella

“…It contains, in addition to the actual research data in original order, technical and descriptive metadata (if created) for each file or directory as well as a manifest within one single TAR ("tape archive", a unix archiving format and utility) file as an entity in one place. …”
Get full text

Effect of combined addition of Zr, Ti and Y on microstructure and tensile properties of an Al-Zn-Mg-Cu alloy by Jiaheng Li, Yingbo Zhang, Mojia Li, Yunfeng Hu, Qi Zeng, Pu Zhang

“….%) alloy is systematically investigated by means of X-ray diffraction, optical microscopy, scanning electron microscopy, transmission electron microscopy and room-temperature unixal tensile tests. After adding 0.12 %Zr, 0.04 %Ti and 0.28 %Y, L12-Al3Zr/(Al,Zn)3Zr, AlMgZnTiCuFe and (Al,Zn)8Cu4Y phases were induced; the as-T6 treated microstructure of the base alloy changed from fully recrystallized to fully unrecrystallized, accompanied by strong 〈100〉 + 〈111〉 fiber textures along extrusion direction. …”
Get full text