StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs by Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo

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Comparing methods for constructing and representing human pangenome graphs by Francesco Andreace, Pierre Lechat, Yoann Dufresne, Rayan Chikhi

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MoMI-G: modular multi-scale integrated genome graph browser by Toshiyuki T. Yokoyama, Yoshitaka Sakamoto, Masahide Seki, Yutaka Suzuki, Masahiro Kasahara

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VariantStore: an index for large-scale genomic variant search by Prashant Pandey, Yinjie Gao, Carl Kingsford

Subjects: “…Variation graph…”
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Fast alignment of reads to a variation graph with application to SNP detection by Monsu Maurilio, Comin Matteo

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Adversarial Attention-Based Variational Graph Autoencoder by Ziqiang Weng, Weiyu Zhang, Wei Dou

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Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph by Rui Martiniano, Erik Garrison, Eppie R. Jones, Andrea Manica, Richard Durbin

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Co-linear chaining on pangenome graphs by Jyotshna Rajput, Ghanshyam Chandra, Chirag Jain

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Constructing founder sets under allelic and non-allelic homologous recombination by Konstantinn Bonnet, Tobias Marschall, Daniel Doerr

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Expressway Vehicle Trajectory Prediction Based on Fusion Data of Trajectories and Maps from Vehicle Perspective by Yuning Duan, Jingdong Jia, Yuhui Jin, Haitian Zhang, Jian Huang

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Identifying disease-related microbes based on multi-scale variational graph autoencoder embedding Wasserstein distance by Huan Zhu, Hongxia Hao, Liang Yu

Subjects: “…Variational graph autoencoder…”
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PangeBlocks: customized construction of pangenome graphs via maximal blocks by Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti

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A one-step graph clustering method on heterogeneous graphs via variational graph embedding by Chuang Ma, Helong Xia

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CVAM: CNA Profile Inference of the Spatial Transcriptome Based on the VGAE and HMM by Jian Ma, Jingjing Guo, Zhiwei Fan, Weiling Zhao, Xiaobo Zhou

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Identification of microbe–disease signed associations via multi-scale variational graph autoencoder based on signed message propagation by Huan Zhu, Hongxia Hao, Liang Yu

Subjects: “…Variational graph autoencoder…”
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Graph-based prediction of Protein-protein interactions with attributed signed graph embedding by Fang Yang, Kunjie Fan, Dandan Song, Huakang Lin

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scVGATAE: A Variational Graph Attentional Autoencoder Model for Clustering Single-Cell RNA-seq Data by Lijun Liu, Xiaoyang Wu, Jun Yu, Yuduo Zhang, Kaixing Niu, Anli Yu

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Enhanced industrial text classification via hyper variational graph-guided global context integration by Geng Zhang, Jianpeng Hu

Subjects: “…Hyper variational graph…”
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Community Detection Using Deep Learning: Combining Variational Graph Autoencoders with Leiden and K-Truss Techniques by Jyotika Hariom Patil, Petros Potikas, William B. Andreopoulos, Katerina Potika

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De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data with DeepLinc by Runze Li, Xuerui Yang

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