Two Similar Signatures for Predicting the Prognosis and Immunotherapy Efficacy of Stomach Adenocarcinoma Patients by Taohua Yue, Shuai Zuo, Jing Zhu, Shihao Guo, Zhihao Huang, Jichang Li, Xin Wang, Yucun Liu, Shanwen Chen, Pengyuan Wang

“…How long can STAD patients survive after surgery and whether novel immunotherapy is effective are questions that our clinicians cannot escape.MethodsVarious R packages, GSEA software, Metascape, STRING, Cytoscape, Venn diagram, TIMER2.0 website, TCGA, and GEO databases were used in our study.ResultsIn the TCGA and GEO, macrophage abundance of STAD tissues was significantly higher than that of adjacent tissues and was an independent prognostic factor, significantly related to the overall survival (OS) of STAD patients. …”
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Effects of renal denervation on the expression profile of circular RNA in the serum of patients with resistant hypertension by Wenqin Cai, Jingting Li, Jinzi Su

“…GO/KEGG analysis showed that their functional annotation may be related to nerve injury and hypertension. We used the Venn Diagram Generator to obtain the intersection of predicted target and sympathetic nerve-related genes (from GeneCards website). …”
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Investigation of the Effect of Curcumin on Protein Targets in NAFLD Using Bioinformatic Analysis by Ali Mahmoudi, Alexandra E. Butler, Muhammed Majeed, Maciej Banach, Amirhossein Sahebkar

“…RESULTS: Two collections were constructed: 227 protein–curcumin interactions and 95 NAFLD-associated genes. By Venn diagram, 14 significant targets were identified, and their biological pathways evaluated. …”
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New Insight into Drugs to Alleviate Atopic March via Network Pharmacology-Based Analysis by Ki-Kwang Oh, Md. Adnan, Dong-Ha Cho

“…The final overlapping targets were considered as key targets of AM, which were visualized by a Venn diagram. The protein–protein interaction (PPI) network was constructed using R package software. …”
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Analysis of bacterial community structure of Fuzhuan tea with different processing techniques by Liu Shiquan, Li Taotao, Yu Songlin, Zhou Xiaohong, Liu Zhanjun, Zhang Xuemao, Cai Hongmei, Hu Zhiyuan

“…We observed notable differences in the bacterial communities of the five groups, where there were only 51 consensus sequences. ASV/OTU Venn diagram, Chao1, Ace, Simpson indices, and dilution curve analyses consistently revealed that machine-pressed tea exhibited the highest bacterial diversity. …”
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Age, skin color, self-rated health, and depression associated with co-occurrence of obesogenic behaviors in university students: a cross-sectional study by Bruna Carolina Rafael Barbosa, Magda do Carmo Parajára, Waléria de Paula, Elaine Leandro Machado, Adriana Lúcia Meireles

“…The outcome was the co-occurrence of obesogenic behaviors, measured as the sum of three risk behaviors: inadequate eating practices, leisure-time physical inactivity, and sedentary behavior. A Venn diagram was used to evaluate the simultaneous occurrence of risk behaviors. …”
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Transcriptome analysis of renal ischemia/reperfusion injury and its modulation by ischemic pre-conditioning or hemin treatment. by Matheus Correa-Costa, Hátylas Azevedo, Mariane Tami Amano, Giselle Martins Gonçalves, Meire Ioshie Hyane, Marcos Antonio Cenedeze, Paulo Guilherme Renesto, Alvaro Pacheco-Silva, Carlos Alberto Moreira-Filho, Niels Olsen Saraiva Câmara

“…Also, new insights were gained about the underlying protection mechanisms against renal IRI promoted by IPC and Hemin treatment. Venn diagram analysis allowed us to uncover common and exclusively differentially expressed genes between these two protective maneuvers, underscoring potential common and exclusive biological functions regulated in each case. …”
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Identification of significant genes associated with prognosis of gastric cancer by bioinformatics analysis by Shuanhu Wang, Song Tao, Yakui Liu, Yi Shi, Mulin Liu

“…Differentially expressed genes (DEGs) between GC and normal gastric tissues were screened by R software and Venn diagram software. GO and KEGG pathway enrichment of DEGs was performed using the DAVID database. …”
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Integrated bioinformatics and network pharmacology to identify the therapeutic target and molecular mechanisms of Huangqin decoction on ulcerative Colitis by Yi Wu, Xinqiao Liu, Guiwei Li

“…Co-targets between HQD and ulcerative colitis are obtained by Draw Venn Diagram. PPI (Protein–protein interaction) network was constructed by the STRING database. …”
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Identification of Key Genes and Pathways Associated with <i>PIEZO1</i> in Bone-Related Disease Based on Bioinformatics by Yuanyuan Zhou, Chen Zhang, Zhongguo Zhou, Chao Zhang, Jiali Wang

“…The differentially expressed genes (DEGs) in tendon, femur, and humerus bone tissue; cortical bone; and bone-marrow-derived macrophages were identified with the criteria of |log2FC| > 1 and adjusted <i>p</i>-value < 0.05 analysis based on a dataset from GSE169261, GSE139121, GSE135282, and GSE133069, respectively, and visualized in a volcano plot. Venn diagram analyses were performed to identify the overlapping DEGs expressed in the above-mentioned tissues. …”
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Identification of peptidoglycan-associated proteins as vaccine candidates for enterococcal infections. by Felipe Romero-Saavedra, Diana Laverde, Dominique Wobser, Charlotte Michaux, Aurélie Budin-Verneuil, Benoit Bernay, Abdellah Benachour, Axel Hartke, Johannes Huebner

“…Comparison between the three extraction methods by Venn diagram and subcellular localization predictors (CELLO v.2.5 and Gpos-mPLoc) allowed us to identify six proteins that are most likely surface-exposed: the SCP-like extracellular protein, a low affinity penicillin-binding protein 5 (PBP5), a basic membrane lipoprotein, a peptidoglycan-binding protein LysM (LysM), a D-alanyl-D-alanine carboxypeptidase (DdcP) and the peptidyl-prolyl cis-trans isomerase (PpiC). …”
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Hub genes identification and association of key pathways with hypoxia in cancer cells: A bioinformatics analysis by Faiza Aziz, Naila Shoaib, Abdul Rehman

“…Using the GEO2R tool and Venn diagram software, we identified common differentially expressed genes (cDEGs). …”
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DIRAS3, GPR171 and RAC2 were identified as the key molecular patterns associated with brain metastasis of breast cancer by Ji Dai, Qi Chen, Guoqing Li, Mengze Chen, Haohang Sun, Meidi Yan

“…A total of 1070 differential genes for recurrence to the brain were obtained based on the dataset GSE12276. The Venn diagram showed 24 intersecting genes associated with brain metastasis. …”
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Lipid Profile Patterns in a Rural Area of Ramanagara District by MR Kusuma, Y Sahana, HD Shilpa

“…Percentage analysis and association of lipid profile parameters and age as well as gender was established using appropriate statistical methods like percentage analysis, Chi-square test, Venn-diagram and trend chart. Results: Less than half of the population were found to have high serum levels of Triglyceride (TG), Low Density Lipoprotein (LDL) and TG/HDL ratio. …”
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Myricetin alleviated hydrogen peroxide-induced cellular senescence of nucleus pulposus cell through regulating SERPINE1 by Rongsheng Chen, Xiaobo Zhang, Xitian Zhu, Changsheng Wang, Weihong Xu

“…RNA-Sequencing (RNA-seq) technology was used to identify differentially expressed genes (DEGs) between hydrogen peroxide + MYR (HO + MYR) group and HO group, and Gene Ontology (GO) functional was performed to analyze DEGs. A Venn diagram was generated to screen overlapping DEGs related to aging and inflammation, and the role of the promising validated DEG was selected for further investigation by gene functional assays. …”
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Application of GC–TOF/MS and GC×GC–TOF/MS to Discriminate Coffee Products in Three States (Bean, Powder, and Brew) by Xiaolei Fang, Yanping Chen, Jie Gao, Zimu Run, He Chen, Ruoqi Shi, Yingqiu Li, Haihua Zhang, Yuan Liu

“…The results of the venn diagrams of different coffee samples showed that most VOCs existed in 2–3 kinds of coffee. …”
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Limb Mesoderm and Head Ectomesenchyme Both Express a Core Transcriptional Program During Chondrocyte Differentiation by Patsy Gomez-Picos, Katie Ovens, B. Frank Eames

“…Immature chondrocytes (IMM) represent the early stages of cartilage differentiation, while mature chondrocytes (MAT) undergo additional stages of differentiation, including hypertrophy and stimulating matrix mineralization and degradation. Venn diagram analyses generally revealed a high degree of conservation between chondrocyte transcriptomes of the limb and head, including SOX9, COL2A1, and ACAN expression. …”
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Transcriptome analysis of neonatal larvae after hyperthermia-induced seizures in the contractile silkworm, Bombyx mori. by Hongyi Nie, Chun Liu, Yinxia Zhang, Mengting Zhou, Xiaofeng Huang, Li Peng, Qingyou Xia

“…By digital gene expression profiling, we determined the gene expression profile of three strains (cot/cot ok/ok, +/+ ok/ok and +/+ +/+) under hyperthermia (42°C) and normal (25°C) conditions. A Venn diagram showed that the most common differentially expressed genes (DEGs, FDR<0.01 and log2 Ratio≥1) were up-regulated and annotated with the heat shock proteins (HSPs) in 3 strains after treatment with hyperthermia, suggesting that HSPs rapidly increased in response to high temperature; 110 unique DEGs, could be identified in the cot mutant after inducing hyperthermia when compared to the control strains. …”
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Scaling-up Community Participatory Mapping and Land Use Planning to reinforce customary land governance for multi-stakeholder engagement on sustainable investments and trade on lan... by Harrison AjebeNnoko

“…It is a cross-sectional analysis of land use data, agricultural-climatic-ecological factors and future needs that allows the establishment of scenarios based on development objectives through the use of participatory diagnostic tools (problem tree, venn diagram). Results The result shows that participatory planning is an approach dedicated to the sustainable management of resources by local communities. …”
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bestDEG: a web-based application automatically combines various tools to precisely predict differentially expressed genes (DEGs) from RNA-Seq data by Unitsa Sangket, Prasert Yodsawat, Jiratchaya Nuanpirom, Ponsit Sathapondecha

“…With bestDEG, users can select DE analysis methods and parameters in the user-friendly web interface. bestDEG also provides a Venn diagram and a table of results. Moreover, the consensus method of this tool can maximize the precision or minimize the false discovery rate (FDR), which reduces the cost of gene expression validation by minimizing wet-lab experiments.…”
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