DNA methylation exploration for ARDS: a multi-omics and multi-microarray interrelated analysis by Shi Zhang, Zongsheng Wu, Jianfeng Xie, Yi Yang, Lei Wang, Haibo Qiu

“…The difference analyses between ARDS and healthy population were performed through limma R package, and furthermore, interrelated analyses of DNA methylation and transcript were accomplished by VennDiagram R package. Perl and sva R package were used to merge microarray data and decrease heterogeneities among different studies. …”
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Comparative Transcriptome Analysis between Resistant and Susceptible Pakchoi Cultivars in Response to Downy Mildew by Yaosong Chen, Liming Miao, Xiaofeng Li, Yiwen Liu, Dandan Xi, Dingyu Zhang, Lu Gao, Yuying Zhu, Shaojun Dai, Hongfang Zhu

“…A total of 1073 disease-resistance-related differentially expressed genes were identified using a Venn diagram. The Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses revealed that these genes were mainly involved in plant−pathogen interaction, plant hormone signal transduction, and other photosynthesis-related metabolic processes. …”
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Metabolome and transcriptome analyses identify the characteristics and expression of related saponins of the three genealogical plants of bead ginseng by Yihan Ye, Nan Ma, Yidan Peng, Ying Chen, Yuqu Zhang, Shuyan Zhao, Wei Ren, Yonggang Yan, Gang Zhang, Xinjie Yang, Xiujuan Peng

“…We performed differential gene analysis on three groups of samples according to the Venn diagram and found that 181 differential genes were present. …”
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Azoxystrobin induces apoptosis via PI3K/AKT and MAPK signal pathways in oral leukoplakia progression by Lingyu Li, Jing Li, Hui Chen, Yajun Shen, Yunping Lu, Min Zhang, Xiaofei Tang

“…The expression of PI3K/AKT and MAPK markers were analyzed by immunohistochemistry in vivo or by western blot in vitro.Results: Venn diagram showed 457 overlapping targets, which were involved in the PI3K/AKT, MAPK, and apoptosis pathways, and the top 5 hub modules were TP53, STAT3, AKT1, MAPK1, and PIK3R1. …”
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Construction and Analysis of a Diagnostic Model Based on Differential Expression Genes in Patients With Major Depressive Disorder by Qing Long, Rui Wang, Maoyang Feng, Xinling Zhao, Yilin Liu, Xiao Ma, Lei Yu, Shujun Li, Zeyi Guo, Yun Zhu, Zhaowei Teng, Yong Zeng

“…The shared DEGs from the module and GSE98793 were identified using a Venn diagram. Functional pathway prediction was used to identify the most disease-related DEGs. …”
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Prediction of the Molecular Mechanisms Underlying Erlong Zuoci Treatment of Age-Related Hearing Loss via Network Pharmacology-Based Analyses Combined with Experimental Validation by Qing Liu, Ning Li, Yifang Yang, Xirui Yan, Yang Dong, Yinting Peng, Jianrong Shi

“…A total of 145 shared targets of ELZC and ARHL were acquired by Venn diagram analysis. Functional enrichment analysis suggested that ELZC might exert its pharmacological effects in multiple biological processes, such as cell proliferation, apoptosis, inflammatory response, and synaptic connections, and the potential targets might be associated with AKT, ERK, and STAT3, as well as other proteins. …”
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The potential effects and mechanisms of hispidulin in the treatment of diabetic retinopathy based on network pharmacology by Yao Chen, Jiaojiao Sun, Zhiyun Zhang, Xiaotong Liu, Qiaozhi Wang, Yang Yu

“…The 103 intersecting targets of DR and Eriocauli Flos were obtained by Draw Venn Diagram. In addition, protein-protein interaction network was established from STRING database and the compound-target network was constructed by Cytoscape which screened top 12 core targets with cytoNCA module. …”
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Exploring the active ingredients and potential mechanisms of action of sinomenium acutum in the treatment of rheumatoid arthritis based on systems biology and network pharmacology by Nan Gong, Nan Gong, Lin Wang, Lili An, YuanKun Xu, YuanKun Xu

“…The two targets were mapped by Venn diagram and the intersection was taken. The intersecting targets were used to construct protein-protein interaction (PPI) network maps in the String database, and Metascape was used for Gene Ontology (GO) functional annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment. …”
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A novel glycosylation-related gene signature predicts survival in patients with lung adenocarcinoma by Jin-xiao Liang, Qian Chen, Wei Gao, Da Chen, Xin-yu Qian, Jin-qiao Bi, Xing-chen Lin, Bing-bing Han, Jin-shi Liu

“…Differentially expressed GTs-related genes (DGTs) were identified using edge package and Venn diagram. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and ingenuity pathway analysis (IPA) methods were used to investigate the biological processes of DGTs. …”
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Behavioral verification and risk factors of HIV cross-population transmission in China: analysis of national surveillance data 1989–2022 by Chang Cai, Houlin Tang, Qianqian Qin, Yichen Jin, Fan Lyu

“…Contact histories were described using bar and venn diagram. Trend in engaging in HBRB among MSM were identify potential change using the Cochran-Armitage test. …”
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Contribution of the Broiler Breeders’ Fecal Microbiota to the Establishment of the Eggshell Microbiota by Sandrine Trudeau, Alexandre Thibodeau, Alexandre Thibodeau, Jean-Charles Côté, Marie-Lou Gaucher, Marie-Lou Gaucher, Philippe Fravalo, Philippe Fravalo, Philippe Fravalo

“…Our results also showed that both the sampling time and the flock identity significantly influenced the alpha- and the beta-diversities of the studied microbiomes. Using a Venn diagram, we showed that 1790 operational taxonomic units (OTUs) were shared between feces and eggshell samples. …”
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CD22 is a potential target of CAR-NK cell therapy for esophageal squamous cell carcinoma by Tingdang Liu, Ximing Dai, Yien Xu, Tian Guan, Liangli Hong, Tahir Zaib, Qi Zhou, Ke Cheng, Xiaoling Zhou, Changchun Ma, Pingnan Sun

“…Then according to Venn diagram, CD22 was selected for further investigation. …”
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Construction of a potentially functional lncRNA-miRNA-mRNA network in sepsis by bioinformatics analysis by Li-ming Zheng, Jun-qiu Ye, Jun-qiu Ye, Heng-fei Li, Heng-fei Li, Quan Liu, Quan Liu

“…Finally, quantitative real-time polymerase chain reaction (qRT-PCR) was used to confirm five lncRNAs from the ceRNA network.Results: Through Venn diagram analysis, we found that 57 DElncRNAs, 6 DEmiRNAs and 317 DEmRNAs expressed abnormally in patients with sepsis. …”
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Screening recurrent glioblastoma-related genes and analyzing their gene expressions in association with clinicopathological parameters and prognosis by LIN Yi, WANG Ce, KANG Xun, KANG Zhuang, CHEN Feng, JIANG Bo, LI Wenbin

“…Key genes were intersected by PPI network and Venn diagram, and the Gene Expression Profiling Interactive Analysis (GEPIA) and Chinese Glioma Genome Atlas (CGGA) database were analyzed for association of key gene expressions and survival status. …”
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Impact of Porcine Arterivirus, Influenza B, and Their Coinfection on Antiviral Response in the Porcine Lung by Damarius S. Fleming, Laura C. Miller, Yun Tian, Yonghai Li, Wenjun Ma, Yongming Sang

“…Expression data were considered statistically significant based on false discovery rate (FDR) ⫹ 0.1. Venn diagram comparisons of the DEGs across dpi showed that groups shared only 16 DEGs at 3 dpi, no DEGs were shared at 5 dpi, and for 7 dpi, only the PRRSV and IBV/PRRSV groups were compared and shared a total of 43 DEGs. …”
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Aqueous humor proteome of primary open angle glaucoma: A combined dataset of mass spectrometry studies by W.H.G Hubens, R.J.C Mohren, I Liesenborghs, L.M.T Eijssen, W.D Ramdas, C.A.B Webers, T.G.M.F Gorgels

“…We compared the overlap of identified proteins using the VLOOKUP function of Excel and a publicly available Venn diagram software. For the peptide sequences that can belong to multiple proteins (usually of the same protein family), we initially included all possibly identified proteins. …”
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Mechanisms underlying the therapeutic effects of 4-octyl itaconate in treating sepsis based on network pharmacology and molecular docking by Maolin Chen, Maolin Chen, Maolin Chen, Wenxing Su, Wenxing Su, Fangling Chen, Tianlun Lai, Tianlun Lai, Yilun Liu, Yilun Liu, Daojiang Yu, Daojiang Yu

“…Then, all the potential targets of 4-OI anti-sepsis were screened by the online platform Draw Venn diagram, and the hub genes were screened by Cytoscape software. …”
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Therapeutic mechanism of Toujie Quwen granules in COVID-19 based on network pharmacology by Ying Huang, Wen-jiang Zheng, Yong-shi Ni, Mian-sha Li, Jian-kun Chen, Xiao-hong Liu, Xing-hua Tan, Ji-qiang Li

“…Genes co-expressed with ACE2 were considered potential therapeutic targets on COVID-19. Venn diagram was created to show correlative targets of TJQW against COVID-19. …”
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Identification of potential genes in upper tract urothelial carcinoma using next-generation sequencing with bioinformatics and in vitro analyses by Hsiang-Ying Lee, Ching-Chia Li, Wei-Ming Li, Ya-Ling Hsu, Hsin-Chih Yeh, Hung-Lung Ke, Bi Wen Yeh, Chun-Nung Huang, Chien-Feng Li, Po-Lin Kuo, Wen-Jeng Wu

“…Results Interactions between selected target genes obtained using the NGS and miRmap methods were assessed through a Venn diagram analysis. Six potential genes, namely, PDE5A, RECK, ZEB2, NCALD, PLCXD3 and CYBRD1 showed significant differences. …”
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Concept Coverage Analysis of Ophthalmic Infections and Trauma among the Standardized Medical Terminologies SNOMED-CT, ICD-10-CM, and ICD-11 by Kiana Tavakoli, MD, Fritz Gerald P. Kalaw, MD, Sonali Bhanvadia, Michael Hogarth, MD, Sally L. Baxter, MD, MSc

“…The overlap of equal concepts in each terminology was represented in a Venn diagram. Main Outcome Measures: Proportions of clinical concepts with corresponding codes at various levels of semantic alignment. …”
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