A Review of Tools for Incorporating Community Knowledge, Preferences, and Values into Decision Making in Natural Resources Management by Timothy Lynam, Wil de Jong, Douglas Sheil, Trikurnianti Kusumanto, Kirsten Evans

“…The tools assessed are Bayesian belief networks and system dynamic modeling tools, discourse-based valuation, the 4Rs framework, participatory mapping, scoring or the Pebble Distribution Method, future scenarios, spidergrams, Venn diagrams, and Who Counts Matrices.…”
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Storing, linking, and mining microarray databases using SRS by Kors Jan A, de Jager Victor, Smid Marcel, Lange Don de, Veldhoven Antoine, Jenster Guido

“…For example, we built an interface to a program called Venn Mapper, which collects its microarray data from SRS, processes the data by creating Venn diagrams, and saves the data for interpretation.…”
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Functional diversity of bacterial genes associated with aromatic hydrocarbon degradation in anthropogenic dark earth of Amazonia by Mariana Gomes Germano, Fabiana de Souza Cannavan, Lucas William Mendes, Amanda Barbosa Lima, Wenceslau Geraldes Teixeira, Vivian Helena Pellizari, Siu Mui Tsai

“…Heterogeneity estimates indicated greater diversity in BC libraries; and Venn diagrams showed more unique operational protein clusters (OPC) in the SF_BC library than the ADE soil, which indicates that specific metabolic processes may occur in biochar. …”
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Effects of mixed lactic acid bacteria on intestinal microbiota of mice infected with Staphylococcus aureus by Dayong Ren, Shengjie Gong, Jingyan Shu, Jianwei Zhu, Hongyan Liu, Ping Chen

“…By establishing operational taxonomic units and using rarefaction analysis, rank-abundance distribution curves, heat maps, Venn diagrams, bacterial community structures, and hierarchical clustering analysis, Bacteroidales, Lachnospiraceae, Bacteroides and Prevotellaceae were the most abundant taxa in the samples, we found that the composition of the intestinal microbiota was similar between the protection group administered mixed LAB and the negative control group. …”
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Rhizosphere Bacterial Communities of Arundo Donax Grown in Soil Fertilised with Sewage Sludge and Agricultural by-Products by Ondreičková Katarína, Gubišová Marcela, Gubiš Jozef, Klčová Lenka, Horník Miroslav

“…The amount of mgDNA was statistically higher in samples with additive than in control samples without it in both dates. The Venn diagrams showed that operational taxonomic units which were common to all samples were represented in 32.8% in ARISA and 43.4% in T-RFLP. …”
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Differences in Gut Microbiota between Healthy Individuals and Patients with Perianal Abscess before and after Surgery by Hezhai Yin, Bairu Luo, Qi Wang, Zhonghua Hong, Huilin Chen, Lidong Shen, Bin Shen, Bo Hu

“…In this study, significant changes in interleukin 6 and tumor necrosis factor-α in the blood of healthy subjects, patients with perianal abscesses, and patients after perianal abscess surgery were identified. 16S rRNA gene sequencing technology was used to detect the changes in the gut microbiota among 30 healthy individuals and 30 patients with perianal abscess before and after surgery. Venn diagrams and alpha diversity analyses indicated differences in the abundance and uniformity of gut microbiota between the healthy individuals and patients with perianal abscesses before and after surgery. …”
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Occupational status and nutrition profile and health of public municipal employees by Patrícia Pinheiro de Freitas, Nathália Luíza Ferreira, Ada Ávila Assunção, Iara Barreto Bassi, Aline Cristine Souza Lopes

“…The coexistence of dietary risk factors (low consumption of fruits and vegetables, high consumption of chicken skin and meat fat, and insufficient time to eat at work) were evaluated using Venn diagrams. Results: Arterial hypertension, diabetes mellitus and overweight were more frequently reported in the low occupational status, and positive self-reported health was directly related to the occupational status of participants. …”
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Occupational status and nutrition profile and health of public municipal employees by Patrícia Pinheiro de Freitas, Nathália Luíza Ferreira, Ada Ávila Assunção, Iara Barreto Bassi, Aline Cristine Souza Lopes

“…The coexistence of dietary risk factors (low consumption of fruits and vegetables, high consumption of chicken skin and meat fat, and insufficient time to eat at work) were evaluated using Venn diagrams. Results: Arterial hypertension, diabetes mellitus and overweight were more frequently reported in the low occupational status, and positive self-reported health was directly related to the occupational status of participants. …”
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Circ_0040039 May Aggravate Intervertebral Disk Degeneration by Regulating the MiR-874-3p-ESR1 Pathway by Yongjin Li, Yongjin Li, Yongjin Li, Xuke Wang, Xuke Wang, Haiwei Xu, Guowang Li, Guowang Li, Guowang Li, Zhenxin Huo, Zhenxin Huo, Zhenxin Huo, Lilong Du, Lilong Du, Lilong Du, Kaihui Zhang, Kaihui Zhang, Kaihui Zhang, Li Shen, Li Shen, Li Shen, Hao Li, Hao Li, Hao Li, Baoshan Xu, Baoshan Xu, Baoshan Xu

“…In this study, bioinformatics tools, encompassing Gene Ontology pathway and Venn diagrams analysis, and protein–protein interaction (PPI) network construction were used to identify functional molecules related to IDD. …”
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Molecular analysis to identify novel potential biomarkers as drug targets in colorectal cancer therapy: an integrated bioinformatics analysis by Mansour K. Gatasheh, Sathan Raj Natarajan, Rajapandiyan Krishnamoorthy, Tawfiq S Alsulami, Ponnulakshmi Rajagopal, Chella Perumal Palanisamy, Vishnu Priya Veeraraghavan, Selvaraj Jayaraman

“…Using GEO2R identified DEGs in CRC, and Funrich software facilitated the visualization of DEGs through Venn diagrams. From a total of 114 enhanced DEGs, potential hub genes were further filtered based on their nodal strength and edges using STRING database. …”
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FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene Lists by Foteini Thanati, Evangelos Karatzas, Fotis A. Baltoumas, Dimitrios J. Stravopodis, Aristides G. Eliopoulos, Georgios A. Pavlopoulos

“…Users can upload several lists and use interactive UpSet plots, as an alternative to Venn diagrams, to handle unions or intersections among the given input files. …”
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Understanding structure/function relationships in nitrifying microbial communities after cross-transfer between freshwater and seawater by Blanca M. Gonzalez-Silva, Kjell Rune Jonassen, Ingrid Bakke, Kjetill Østgaard, Olav Vadstein

“…The bacterial community structure was characterized and Venn diagrams were included. The results indicated that after salinity cross-transfer, the FR was not significantly recovered at seawater salinity whereas SR showed high resistance to stress caused by low-salt. …”
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Assessing the Effect of Physicochemical Properties of Saline and Sodic Soil on Soil Microbial Communities by Junzhi Gao, Qingzhou Zhao, Dongdong Chang, Fabrice Ndayisenga, Zhisheng Yu

“…The results of ESP and EC in the soil samples indicated that the soil samples were categorized as saline soil and sodic soil. Venn diagrams indicated that unique OTUs in saline soil showed higher adaptation and environmental tolerance. …”
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A Proteomics Data Mining Strategy for the Identification of Quinoa Grain Proteins with Potential Immunonutritional Bioactivities by Rocío Galindo-Luján, Laura Pont, Victoria Sanz-Nebot, Fernando Benavente

“…In addition, data interpretation using Venn diagrams, heat maps, and scatterplots revealed proteome similarities and differences with respect to the AMPs, OSIPs, and STPIs, and the most relevant bioactive proteins in the predominant commercial quinoa grains (i.e., black, red, white (from Peru), and royal (white from Bolivia)). …”
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EDGAR: A software framework for the comparative analysis of prokaryotic genomes by Vorhölter Frank-Jörg, Pühler Alfred, Doppmeier Daniel, Albaum Stefan P, Blom Jochen, Zakrzewski Martha, Goesmann Alexander

“…Visualization features, like synteny plots or Venn diagrams, are offered to the scientific community through a web-based and therefore platform independent user interface <url>http://edgar.cebitec.uni-bielefeld.de</url>, where the precomputed data sets can be browsed.…”
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Comparison of sequencing based CNV discovery methods using monozygotic twin quartets. by Marc-André Legault, Simon Girard, Louis-Philippe Lemieux Perreault, Guy A Rouleau, Marie-Pierre Dubé

“…The similarity between the calls from the different tools and the advantage of combining call sets were also considered.ERDS and CNVnator obtained the best performance when considering the inherited CNV rate with a mean of 0.74 and 0.70, respectively. Venn diagrams were generated to show the agreement between the different algorithms, before and after filtering out familial inconsistencies. …”
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Studies on Reliability and Measurement Error of Measurements in Medicine &ndash; From Design to Statistics Explained for Medical Researchers by Mokkink LB, Eekhout I, Boers M, van der Vleuten CP, de Vet HC

“…We explain how these choices determine how intraclass correlation coefficients and standard errors of measurement formulas are built for different designs by using Venn diagrams. Strategies for improving the measurement are explained, and recommendations for reporting the essentials of these studies are described. …”
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Bioinformatics analysis identifies potential biomarkers for the prediction and treatment of myocardial infarction by Yu-Yao Ji, Siang Wei, Ran Xu, Run-Da Wu, Kang Yao, Yun-Zeng Zou

“…DEGs were screened using GEO2R, and DEGs in multiple datasets were identified using Venn diagrams. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genome (KEGG) pathway enrichment analyses were performed using the Database for Annotation, Visualization, and Integrated Discovery v6.8. …”
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Construction of lncRNA and mRNA co-expression network associated with nasopharyngeal carcinoma progression by Xu Lu, Xing Chen, Xinke Wang, Jing Qing, Ji Li, Yunyun Pan

“…The two datasets were subjected to differential analysis after removing batch effects, and then Venn diagrams were used to screen for overlapping genes in the module genes and differential genes. …”
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A Network Pharmacology Based Research on the Mechanism of Donepezil in Treating Alzheimer's Disease by Lihua Liu, Yingying Zhu, Peng Fu, Jundong Yang

“…Disease targets were screened and selected utilizing GeneCards, TTD, DrugBank, CTD, and other online databases. Then, Venn diagrams were generated to identify the intersections. …”
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