Network pharmacology of bioactives from Sorghum bicolor with targets related to diabetes mellitus. by Ki Kwang Oh, Md Adnan, Dong Ha Cho

“…Genes associated with the selected compounds or T2DM were extracted from public databases, and the overlapping genes between SB-compound related genes and T2DM target genes were identified using Venn diagram. Then, the networking between selected compounds and overlapping genes was constructed, visualized, and analyzed by RStudio. …”
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Tailored modulation of S100A1 and RASSF8 expression by butanediamide augments healing of rotator cuff tears by Yuan Lin, Ruipeng Guo, Geng R, Bin Xu

“…Subsequently, the network’s core genes were determined employing a Venn diagram. Enrichment analysis facilitated the unveiling of the biological roles and signal transduction pathways of these pivotal genes, thus shedding light on molecular strategies for RCT-targeted treatment. …”
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Study of the Variability of the Chemical Profile, and Biological Activity Approaches of Hedychium coronarium J. Koenig Essential Oil from Different Habitats of Uttarakhand, India by Sushila Arya, Sonu Kumar Mahawer, Himani Karakoti, Ravendra Kumar, Om Prakash, Satya Kumar, Mamta Latwal, Ganesh Panday, Ravi Mohan Srivastava, Mozaniel Santana de Oliveira, Dharmendra Singh Rawat

“…To visually observe the variation in the oil composition profile of essential oils, heat map clustering, Venn diagram, and principal component analysis (PCA) were performed. …”
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Screen Key Genes Associated with Distraction-Induced Osteogenesis of Stem Cells Using Bioinformatics Methods by Jishizhan Chen, Jia Hua, Wenhui Song

“…<b>Results:</b> Three hub genes (<i>IL6</i>, <i>MMP2</i>, and <i>EP300</i>) that were highly associated with distraction-induced osteogenesis of MSCs were identified via the Venn diagram. These hub genes could provide a new understanding of distraction-induced osteogenic differentiation of MSCs and serve as potential gene targets for optimising DO via targeted therapies.…”
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Metabolic transition in mycorrhizal tomato roots by Javier eRivero, Jordi eGamir, Ricardo eAroca, Maria J. ePozo, Víctor eFlors

“…Mycorrhization, therefore, increased the flux into those pathways. Venn-diagram analysis showed that there are many induced signals shared by both mycorrhizal interactions, pointing to general mycorrhiza-associated changes in the tomato metabolome. …”
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PacBio next-generation sequencing uncovers Apicomplexa diversity in different habitats by Mahmoud Gad, Mariam E. Fawzy, Ahmad Z. Al-Herrawy, Sayeda M. Abdo, Noura Nabet, Anyi Hu

“…These results were supported by PERMANOVA (P < 0.001), ANOSIM (P < 0.001), Cluster analysis, and Venn diagram. Dominant genera of Apicomplexa in inlet samples included Gregarina (38.54%), Cryptosporidium (32.29%), and Leidyana (11.90%). …”
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An Interactive View of the Social Economy by Laurie Mook, Jack Quarter

“…The authors use a Venn diagram to illustrate differing forms of interaction between the social economy and other parts of society, and also the fluidity of the social economy. …”
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Effects of gastrodin on the expression of brain aging‐related genes in SAM/P‐8 mice based on network pharmacology by Nan Zhao, Rui Jiang, Jun‐Jie Cheng, Qiu‐Xia Xiao

“…In addition, we collected the target genes of gastrodin and aging from a network database, and a Venn diagram was created to obtain the intersection target genes of gastrodin and aging. …”
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Study on the Mechanism of Coptis Chinensis in the Treatment of Diabetic Nephropathy Based on Network Pharmacology by Yu Cheng, Qian Liting, Chen Ying, Guan Jing, Jiang Shuang, Song Danning

“…The TCMSP database was used to search the main components and related targets of Coptis chinensis; the GeneCards and CTD databases were used to screen the disease targets of diabetic nephropathy, and the intersection of the targets and disease targets was taken and plotted in Venn diagram; the target protein interaction (PPI) network was constructed from STRING database; the DAVID 6.8 online tool was used to GO and KEGG enrichment analyses were performed using DAVID 6.8 online tool to obtain the key signaling pathways of Coptis chinensis acting in diabetic nephropathy. …”
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Leaf Extract of <i>Perilla frutescens</i> (L.) Britt Promotes Adipocyte Browning via the p38 MAPK Pathway and PI3K-AKT Pathway by Fancheng Chen, Silin Wu, Dejian Li, Jian Dong, Xiaowei Huang

“…The browning-related target genes were obtained from the Gene Card database. A Venn diagram was employed to obtain the overlapped genes that may play a part in PF promoting adipocyte browning, and an enrichment was analysis conducted based on these overlapped genes. …”
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Salivary Microbiota Shifts under Sustained Consumption of Oolong Tea in Healthy Adults by Zhibin Liu, Hongwen Guo, Wen Zhang, Li Ni

“…Moreover, via correlation network and Venn diagram analyses, seven bacterial taxa, including <i>Streptococcus</i> sp. …”
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Computational approach in predicting infectious bursal disease virus (IBDV) epitopes by Awang Keri, Awang Ilham, Mat Isa, Nurulfiza, Omar, Abdul Rahman, Bejo, Mohd Hair

“…Two common epitopes sequences were determined by Venn diagram. Conservancy degrees of the common epitopes were deduced. …”
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Chicken transcriptome analysis and discovery of novel genes involved in infectious bursal disease virus infection by Ravi, Sharanya

“…About 600 unigenes out of 10,828 were selected for VENNTURE (Venn diagram) analysis that resulted in 12 upregulated and 18 downregulated DEGs that were common to all the six lines of chicken. …”
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Statistical analysis of human tuberculosis microarray gene expression data in the bioconductor R package by Shittu, Umar

“…The regulated genes identified from the LIMMA analysis using Venn diagram indicated more decrease in rate of gene expression than the increase in stimulated tuberculosis while show more increase in rate of gene expression than decrease in unstimulated tuberculosis. …”
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Ferroptosis and Autophagy-Related Genes in the Pathogenesis of Ischemic Cardiomyopathy by Yue Zheng, Yue Zheng, Yue Zheng, Yue Zheng, Yue Zheng, Wenqing Gao, Wenqing Gao, Wenqing Gao, Wenqing Gao, Wenqing Gao, Qiang Zhang, Qiang Zhang, Qiang Zhang, Qiang Zhang, Qiang Zhang, Xian Cheng, Xian Cheng, Xian Cheng, Xian Cheng, Yanwu Liu, Yanwu Liu, Yanwu Liu, Yanwu Liu, Zhenchang Qi, Zhenchang Qi, Zhenchang Qi, Zhenchang Qi, Tong Li, Tong Li, Tong Li, Tong Li, Tong Li, Tong Li

“…The MI mice model was constructed, and qPCR analysis and single-cell sequencing were used to validate the hub genes.ResultsUtilizing the limma package and the Venn diagram, 26 ferroptosis-related and 29 autophagy-related DEGs were obtained. …”
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Exploration of Hub Genes and Pathogenetic Pathways in Systemic Lupus Erythematosus Complicated with Early Onset Atherosclerosis by Han Zhang, Yinde Huang, Xin Li, Wenbin Chen, Yu Lun, Jian Zhang

“…Subsequently, we acquired 78 common DEGs (70 upregulated genes and eight downregulated genes) with the same expression trends by using the Venn diagram. Finally, 12 hub genes, including PTPRC, TYROBP, FCGR3A, ITGAX, LCP2, IL1B, IRF8, LILRB2, CD68, C1QB, CCR7, and C1QA were identified by using seven different algorithms in Cytohubba. …”
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Network pharmacology approach to decipher signaling pathways associated with target proteins of NSAIDs against COVID-19 by Ki Kwang Oh, Md. Adnan, Dong Ha Cho

“…Target proteins related to selected NSAIDs and COVID-19 related target proteins were identified by the Similarity Ensemble Approach, Swiss Target Prediction, and PubChem databases, respectively. Venn diagram identified overlapping target proteins between NSAIDs and COVID-19 related target proteins. …”
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Alpha‐2‐Heremans‐Schmid‐glycoprotein (AHSG) a potential biomarker associated with prognosis of chromophobe renal cell carcinoma: The PROPOLIS study by Xin Li, Cuiyan Ma

“…Results A total of 306 upregulated genes and 678 downregulated genes were identified by a Venn diagram. Ten hub genes were extracted from PPI network. …”
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Protein expression profiling in rat hippocampus after focal cerebral ischemia injury by Lichan He, Rui He, Ruihua Liang, Yi Li, Xiaoqiang Li, Chuqiao Li, Suping Zhang

“…In kyoto encyclopedia of genes and genomes database pathway analysis, ribosome was the most abundant item. A Venn diagram showing the overlap of 25 of the differentially expressed proteins quantified from the four groups and results from the kyoto encyclopedia of genes and genomes pathway analysis suggested that Epstein-Barr virus infection was the most abundant item. …”
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Exploring the mechanism of anti-fatigue of resveratrol based on network pharmacology and molecular docking, and in vitro studies by Peipei Ma, Jinlei Li, Qing Huang, Shijie Wei, Hurong Ge, Zhizhong Wang

“…The anti-fatigue targets of resveratrol were obtained using the Venn diagram, uploaded to the String database, imported into Cytoscape 3.7.1, and constructed into a Protein-protein interaction network. …”
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