Ginseng Folium Attenuates Skin Aging by Limiting the Accumulation of Cellular Reactive Oxygen Species by Hui'e ZHANG, Lianyun DU, Mengyao CHU, Xinhong SONG, Ping YE, Enpeng WANG

“…Methods: The active components and targets of ginseng folium were obtained by TCMSP, and skin aging-related targets were retrieved by GeneCards and OMIM. Online Venn diagram was used to obtain the intersection targets. …”
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Diversity of Microbial Communities in Production and Injection Waters of Algerian Oilfields Revealed by 16S rRNA Gene Amplicon 454 Pyrosequencing. by Nesrine Lenchi, Ozgül Inceoğlu, Salima Kebbouche-Gana, Mohamed Lamine Gana, Marc Llirós, Pierre Servais, Tamara García-Armisen

“…However, no significant difference was found between production waters from flooded and non-flooded wells, suggesting that most of the microorganisms introduced by the injection waters were unable to survive in the production waters. Furthermore, a Venn diagram generated to compare the BCC of production and injection waters of one flooded well revealed only 4% of shared bacterial OTUs. …”
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Identification of Hub Genes in Idiopathic Pulmonary Fibrosis and NSCLC Progression:Evidence From Bioinformatics Analysis by Yuanshan Yao, Zheng Li, Wen Gao

“…Differentially expressed genes (DEGs) were explored by comparing gene expression profiles between IPF tissues and healthy lung tissues from GSE24206, GSE53845, GSE101286 and GSE110147 datasets. Venn Diagram analysis was used to identify the overlapping genes, while GO and KEGG pathway enrichment analysis were used to explore the biological functions of the DEGs using clusterprofiler package. …”
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New Tools in Orthology Analysis: A Brief Review of Promising Perspectives by Bruno T. L. Nichio, Jeroniza Nunes Marchaukoski, Roberto Tadeu Raittz

“…However, new promising tools are being developed, like OrthoVenn (which uses the Venn diagram to show the relationship of ortholog groups generated by its algorithm); or proteinOrtho (which improves the accuracy of ortholog groups); or ReMark (tackling the integration of the pipeline to turn the entry process automatic); or OrthAgogue (using algorithms developed to minimize processing time); and proteinOrtho (developed for dealing with large amounts of biological data). …”
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Integrative Bioinformatics Analysis Reveals Possible Target and Mechanism of Ellipticine Against Breast Cancer Stem Cells. by Adam Hermawan, Herwandhani Putri

“…The prognostic value of the genes was evaluated using Kaplan-Meier survival curves. A Venn diagram of COMPARE microarray data and the gene list from PubMed generates two genes that are regulated by ellipticine and are related to breast cancer stem cells, namely XRCC5 and CD59. …”
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Activity of Industrial Enterprises: Essence, Morphology, Some Approaches to Measurement of Results by Burennikova Nataliia V., Zavgorodniy Igor V., Burennikov Yuriy Yu.

“…Making use of the modified Euler – Venn diagram, the logic-methodological link between the trueness of the paradigms of «resources – activity – result» and «effectiveness – scale – performance» of an industrial enterprise as a production system are illustrated, taking into account the essence of the category of efficiency, which combines the qualitative (effectiveness) and quantitative (scale) components. …”
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Analysis of Volatile Components of Osmanthus fragrans Extracts from Different Varieties by GC-MS and Electronic Nose Combined with Chemometrics by SUN Yali, BIAN Jianming, XIE Qiutao, CHENG Xiaomei, LIU Wei, ZHANG Juhua, LI Gaoyang, ZHU Xiangrong

“…Alcohols, ketones and esters were the main volatile components in O. fragrans extracts. Venn diagram and cluster heatmap showed that the types and contents of volatile components in the four O. fragrans extracts were significantly different. …”
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Exploring the mechanism of metformin action in Alzheimer’s disease and type 2 diabetes based on network pharmacology, molecular docking, and molecular dynamic simulation by Xin Shi, Lingling Li, Zhiyao Liu, Fangqi Wang, Hailiang Huang

“…The intersection of metformin with the targets of AD and T2D is represented by a Venn diagram. The protein-protein interaction (PPI) and core targets networks of intersected targets were constructed by Cytoscape 3.7.1. …”
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Quasi-Targeted Metabolomics Approach Reveal the Metabolite Differences of Three Poultry Eggs by Yan Wu, Hongwei Xiao, Hao Zhang, Ailuan Pan, Jie Shen, Jing Sun, Zhenhua Liang, Jinsong Pi

“…We identified 617 metabolites, of which 303, 324, 302, 64, 81, and 80 differential metabolites were found by two group comparisons: quail egg yolk (QY) vs. quail egg albumen (QW), chicken egg yolk (HY) vs. chicken egg albumen (HW), duck egg yolk (DY) vs. duck egg albumen (DW), quail egg (Q) vs. duck egg (D)/chicken egg (H), and duck egg (D) vs. chicken egg (H), respectively. The Venn diagram showed that 147 metabolites were shared among the chicken, duck, and quail eggs. …”
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Exploring the mechanism of Suanzaoren decoction in treatment of insomnia based on network pharmacology and molecular docking by Shuxiao Wang, Yan Zhao, Xingang Hu

“…The insomnia-related targets were obtained from the GeneCards, DisGeNET, and DrugBank databases. Next, a Venn diagram comprising the drug and disease targets was created, and the intersecting targets were used to draw the active ingredient-target network diagram using Cytoscape software. …”
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Effect of Curcumin on Attenuation of Liver Cirrhosis via Genes/Proteins and Pathways: A System Pharmacology Study by Ali Mahmoudi, Stephen L. Atkin, Tannaz Jamialahmadi, Maciej Banach, Amirhossein Sahebkar

“…Critical clustering groups (MCODE), hub candidates and critical hub genes in liver cirrhosis were identified, and connections between curcumin and liver cirrhosis-related genes were analyzed via Venn diagram. Interaction of hub genes with curcumin by molecular docking using PyRx-virtual screening tools was performed. …”
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Single nucleotide polymorphism mutation related genes in bladder cancer for the treatment of patients: a study based on the TCGA database by Tengyun Long, Xiaoni Li, Guofei Zhang, Chunming Qiu, Ouyang Huan, Canbiao Sun, Yong Yang

“…Then, the overlapping genes between high frequency mutation genes and DEGs were obtained by the Venn diagram tool. These overlapping genes were analyzed by Gene Ontology (GO) and Kyoto Gene and Genome Encyclopedia (KEGG) pathway enrichment analysis, protein–protein interaction (PPI) network construction, survival analysis and drug–gene interaction analysis. …”
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INFLUENCE OF HYDROLOGICAL CYCLE ON THE COMPOSITION AND STRUCTURE OF FISH ASSEMBLAGES IN AN IGAPÓ FOREST, AMAZONAS, BRAZIL by Sara de Castro Loebens, Elêtuza Uchôa Farias, Carlos Edwar de Carvalho Freitas, Kedma Cristine Yamamoto

“…In order to investigate the structure of the igapó and open water assemblages, the rarefaction curve and a Venn diagram and the diversity indices were used, the results of which were tested using the Student's t test and the Mann-Whitney U test. …”
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Intratumoral fibrosis and patterns of immune infiltration in clear cell renal cell carcinoma by Songchen Han, Wenbo Yang, Caipeng Qin, Yiqing Du, Mengting Ding, Huaqi Yin, Tao Xu

“…Results Out of 640 cytokines and immune infiltration markers, we identified 115 proteins that were significantly different in quantity between ccRCC and adjacent normal tissues. In addition, the Venn diagram indicated that six proteins, including Cytotoxic T-Lymphocyte Associated Protein 4 (CTLA4), were significantly associated with intratumoral fibrosis (p < 0.05). …”
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Searching algorithm for Type IV effector proteins (S4TE) 2.0: Improved tools for Type IV effector prediction, analysis and comparison in proteobacteria. by Christophe Noroy, Thierry Lefrançois, Damien F Meyer

“…The software identifies T4E orthologs among strains and provides a Venn diagram and lists of genes for each intersection. …”
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Exploring the Mechanism of Antioxidant Action of Bitter Almond Based on Network Pharmacology and Molecular Docking Techniques by Xuehua Feng, Jingya Niu, Zurong Song, Ali Tao, Rumin Zong, Wenqing Pei, Panpan Gong

“…The targets regulated by their main active ingredients were intersected with oxidative targets, and 53 intersected targets were obtained by Venn diagram, with key targets involving NR3C2, NCOA2, MAOA, ADRA2A, and CHRM1; GO analysis yielded 3616 GO entries, including 2821 biological process (BP) entries, 316 cellular component (CC) entries, and 479 molecular function (MF) entries, and 184 signalling pathways were obtained from KEGG pathway enrichment screening. …”
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Exploration of Prognostic Biomarkers of Muscle-Invasive Bladder Cancer (MIBC) by Bioinformatics by Xianglai Xu, Yelin Wang, Sihong Zhang, Yanjun Zhu, Jiajun Wang

“…Weighted gene co-expression network analysis (WGCNA) and univariate Cox analysis were applied to classify genes into different groups. Venn diagram was used to find the intersection of genes, and prognostic efficacy was proved by Kaplan-Meier analysis. …”
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Exploration of underlying molecular mechanism of Lycii Cortex in Treating Type 2 Diabetes Mellitus Based on Network Pharmacology and Molecular Docking by Li Dongjun, Wang Denghui, Yan Shikai

“…Methods: Ingredients of Lycii Cortex were collected from TCMSP and BATMAN-TCM databases, and the corresponding targets and T2DM-related targets were obtained respectively from SwissTargetPrediction and GenCards databases. Venn diagram was applied to derive the potential active components and effect targets of Lycii Cortex in the treatment of T2DM. …”
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Integrating indigenous knowledge for participatory land use planning (PLUP) in Tra Hat hamlet, a climate-smart village in the Mekong River Delta, Vietnam by Thanh Vu Pham, Hieu Trung Nguyen, Tuan Huy Vuong, Pham Dang Tri Van, Quang Tri Le

“…A total of two consultation meetings, using simple tools (resources mapping, timeline, seasonal calendar, wealth ranking, Venn diagram, pair wise ranking, and key informants’ interviews), were conducted, and 130 households were interviewed during a field visit in 2015. …”
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Comparative Analysis of Hindgut Microbiota Variation in <i>Protaetia brevitarsis</i> Larvae across Diverse Farms by Namkyong Min, Jean Geung Min, Paula Leona T. Cammayo-Fletcher, Binh T. Nguyen, Dongjean Yim

“…Although oak sawdust was the main feed component, there were large variations in distribution and relative abundance across farms at the phylum and genus levels. Venn diagram and linear discriminant analysis effect size analyses revealed large variations in the hindgut microbial communities of <i>P. brevitarsis</i> larvae between farms. …”
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