Recent Advances on the Machine Learning Methods in Identifying DNA Replication Origins in Eukaryotic Genomics by Fu-Ying Dao, Hao Lv, Fang Wang, Hui Ding

“…In this review, we will summarize the current progress in computational prediction of eukaryotic ORIs including the collection of benchmark dataset, the application of machine learning-based techniques, the results obtained by these methods, and the construction of web servers. Finally, we gave the future perspectives on ORIs prediction. …”
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MetaStorm: A Public Resource for Customizable Metagenomics Annotation. by Gustavo Arango-Argoty, Gargi Singh, Lenwood S Heath, Amy Pruden, Weidong Xiao, Liqing Zhang

“…MetaStorm offers two major analysis pipelines: an assembly-based annotation pipeline and the standard read annotation pipeline used by existing web servers. These pipelines can be selected individually or together. …”
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Biochemical Properties and Immunogenic Epitopes of Echinococcus granulosus Glutathione S-Transferase as a Vaccine Target: In-Silico Study by Sasan Khazaei, Abdolhossein Dalimi, Majid Pirestani, Fatemeh Ghaffarifar

“…In addition, B-cell epitopes were predicted and were screened using various web servers, while MHC-binding and CTL epitopes were predicted using IEDB and NetCTL servers, respectively. …”
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Institutional Data Repository Development, a Moving Target by Colleen Fallaw, Genevieve Schmitt, Hoa Luong, Jason Colwell, Jason Strutz

“…When launched in 2016, storage resources and web servers for Illinois Data Bank and supporting systems were hosted on-premises at UIUC. …”
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Systematic analysis of prognostic significance, functional enrichment and immune implication of STK10 in acute myeloid leukemia by Lei Bi, Shuangshuang Jia, Wuyue Hu, Xiaoli Su, Xiequn Chen, Hailong Tang

“…Methods We analyzed the expression, prognosis and potential functions of STK10 utilizing public web servers. Metascape and the String database were used for functional and protein–protein interaction analyses. …”
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Rethinking the A in FAIR Data: Issues of Data Access and Accessibility in Research by Hugh Shanahan, Louise Bezuidenhout

“…Using a virtual personal network (VPN) service we find that access to a set of web sites that underpin Open Science is variable from a set of 14 countries; either through connectivity issues (i.e., connections to download HTML being dropped) or through direct blocking (i.e., web servers sending 403 error codes). Many of the countries included in this study are already marginalized from Open Science discussions due to political issues or infrastructural challenges. …”
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Cyber Physical Sensors and Actuators for Privacy- and Cost-Aware Optimization of User-Generated Content Provisioning by Paolo Bellavista, Carlo Giannelli

“…Then, based on social network sensors and connectivity/networking ones hosted at lightweight domestic Web servers, our CPS actuators can originally and dynamically move content back from the cloud to smart homes when appropriate, in order to both retain full ownership of user-generated content and reduce cloud hosting costs.…”
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Identification of SARS-CoV-2 Main Protease (Mpro) Cleavage Sites Using Two-Dimensional Electrophoresis and In Silico Cleavage Site Prediction by Noémi Miltner, Gergő Kalló, Éva Csősz, Márió Miczi, Tibor Nagy, Mohamed Mahdi, János András Mótyán, József Tőzsér

“…The candidate cellular substrates of Mpro were identified by mass spectrometry, and then potential cleavage sites were predicted in silico using NetCorona 1.0 and 3CLP web servers. The existence of the predicted cleavage sites was investigated by in vitro cleavage reactions using recombinant protein substrates containing the candidate target sequences, followed by the determination of cleavage positions using mass spectrometry. …”
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Large-scale comparative review and assessment of computational methods for phage virion proteins identification by Muhammad Kabir, Chanin Nantasenamat, Sakawrat Kanthawong, Phasit Charoenkwan, Watshara Shoombuatong

“…Subsequently, we explored which factors are important for building more accurate and stable predictors and this included training/independent datasets, feature encoding algorithms, feature selection methods, core algorithms, performance evaluation metrics/strategies and web servers. Finally, we provide insights and future perspectives for the design and development of new and more effective computational approaches for the detection and characterization of PVPs.…”
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Protein interactions: two methods for assessment of the reliability of high throughput observations. by Deane, C, Salwiński, Ł, Xenarios, I, Eisenberg, D

“…Using these two methods, we estimate that approximately 50% of them are reliable, and with the aid of PVM we identify confidently 3003 of them. Web servers for both the PVM and EPR methods are available on the DIP website (dip.doe-mbi.ucla.edu/Services.cgi).…”

Usability study on Mobile Web Pre-Fetching by Sulaiman, S., Lokman, N., Hussien, N. S.

“…It refers to the operation of fetching information from remote web servers even before it is requested. This research approves a web pre-fetching method that is capable to decrease user-perceived latency in web browsing for mobile environment, in which it is essential as mobile devices have several limitations compared to normal desktop PC. …”

Linux administration : a beginners guide / by 434805 Soyinka, Wale

“…The book makes it easy for existing system administrators to quickly zero in on relevant sections of the book to solve or tackle real-world Linux administration issues.Linux Administration: A Beginner's Guide, Sixth Edition Covers the major distributions of Linux server for Fedora, openSUSE and Ubuntu, and the latest Linux kernel release Includes new chapters introducing Distributed File Systems--key for today's cloud computing/virtualization-centric world Contains a new chapter on the business case for Linux and the marketability of Linux administration skills Step-by-step coverage: Technical Summary of Linux Distributions and Windows Server 2008; Installing Linux in a Server Configuration; Installing Software; Single Host Administration; Managing Users; The Command Line; Booting and Shutting Down; File Systems; Core System Services; Compiling the Linux Kernel; Knobs and Dials: The /proc File System; Security and Networking; TCP/IP for System Administrators; Network Configuration; Configuring the Linux Firewall and Router; Local Security; Network Security; Configuring Internet Services; DNS; FTP; Web Servers; SMTP; POP and IMAP; SSH and Encryption; Virtualization; Configuring Intranet Services; Network File Systems (NFS); Distributed File Systems; Network Information Service (NIS); LDAP; Samba (SMB/CIFS); Printing; DHCP; Backups "--…”

Repository of Enriched Structures of Proteins Involved in the Red Blood Cell Environment (RESPIRE). by S Téletchéa, H Santuz, S Léonard, C Etchebest

“…Yet, the resulting information is frequently scattered in many scientific articles, in many databases and specialized web servers. To provide a more compendious view of erythrocytes and of their protein content, we developed a dedicated database called RESPIRE that aims at gathering a comprehensive and coherent ensemble of information and data about proteins in RBC. …”
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A Fuzzy Inference System Design for ICP Protocol Optimization in Cache Appliances Hierarchies by Oscar Linares, Camilo Orozco

“…These appliances use ICP protocol (Internet Cache Protocol) to support interoperation between existing cache hierarchies and web servers, through implementation of a message format to communicate web caches. …”
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JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing. by David K Brown, David L Penkler, Thommas M Musyoka, Özlem Tastan Bishop

“…In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. …”
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NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins by Pino Camilo, Restrepo-Montoya Daniel, Nino Luis F, Patarroyo Manuel E, Patarroyo Manuel A

“…NClassG+ is freely available on the web at <url>http://www.biolisi.unal.edu.co/web-servers/nclassgpositive/</url></p>…”
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How reproducible and reliable is geophysical research? by Mark Ireland, Guillermo Algarabel, Michael Steventon, Marcus Munafò

“…The findings show that: 1) between 1991 and 2021 there were 72 articles with reproducibility in the title and 417 with reliability, with an overall increase in the number of articles with reproducibility or reliability as the subject over the same period; 2) while 60% of journals have a definition of research data, only 20% of journals have a requirement for a data availability statement; and 3) despite ~86% of sampled journal articles including a data availability statement, only 54% of articles have the original data accessible via data repositories or web servers, and only 49% of articles name software used. …”
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In silico structural characterization of Cytochrome c oxidase Subunit 1: A transmembrane protein from Aedes aegypti by Jhansi Venkata Nagamani Josyula, Srinivasa Rao Mutheneni

“…The modelled protein was validated using GROMACS, structural qualitative tools and web servers. Finally the model was docked with carbon monoxide (CO) and nitric oxide (NO) using Auto Dock Tools. …”
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The potential of Myricitrin, a Flavonoid Compound in Eugenia polyantha from Indonesia, as an Antiviral Drug for SARS-Cov-2 through the Molecular Docking Analysis by Syamsul Falah, Laksmi Ambarsari, Dimas Andrianto, Rini Kurniasih, Sanro Tachibana

“…This result was supported by the prediction made according to the Molprobity and PASS Online web servers, which showed that myricitrin has high bioactivity potential as an enzyme inhibitor (with a score of 0.38) and antiviral (with a score of 0.704).…”
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Ethical hacking for IoT: Security issues, challenges, solutions and recommendations by Jean-Paul A. Yaacoub, Hassan N. Noura, Ola Salman, Ali Chehab

“…However, the main issue is the fact that IoT consists of a large variety of IoT devices, firmware, hardware, software, application/web-servers, networks, and communication protocols. …”
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