Identification of NAD interacting residues in proteins by Raghava Gajendra PS, Ansari Hifzur R

“…To provide service to the scientific community, we have developed a user-friendly web server, which is available from URL <url>http://www.imtech.res.in/raghava/nadbinder/</url>.…”
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PHISDetector: A Tool to Detect Diverse In Silico Phage–host Interaction Signals for Virome Studies by Fengxia Zhou, Rui Gan, Fan Zhang, Chunyan Ren, Ling Yu, Yu Si, Zhiwei Huang

“…The PHISDetector can be run either as a web server (http://www.microbiome-bigdata.com/PHISDetector/) for general users to study individual inputs or as a stand-alone version (https://github.com/HIT-ImmunologyLab/PHISDetector) to process massive phage contigs from virome studies.…”
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Inference of miRNA targets using evolutionary conservation and pathway analysis by van Nimwegen Erik, Gaidatzis Dimos, Hausser Jean, Zavolan Mihaela

“…The complete target site predictions as well as the miRNA/pathway associations are accessible on the ElMMo web server.</p>…”
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Effect of mobile-based self-management application on stroke outcomes: a study protocol for triple blinded randomized controlled trial by Hamidreza Tadayon, Mehrdad Farzandipour, Ehsan Nabovati, Hossein Akbari, Seyed Ali Masoud

“…Methods The first stage will include the development of an android-based application using JAVA programming language for developing the user interface and ASP.NET Core for developing Web server. The second stage will be conducted using triple blinded randomized clinical trial (RCT). …”
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ProAll-D: protein allergen detection using long short term memory - a deep learning approach by Pallavi M Shanthappa, Rakshitha Kumar

“…Conclusion: As the LSTM, has an AUC value of 91.5 % is regarded best in predicting allergens. A web server called ProAll-D has been created that successfully identifies novel allergens using the LSTM approach. …”
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CFM-ID 3.0: Significantly Improved ESI-MS/MS Prediction and Compound Identification by Yannick Djoumbou-Feunang, Allison Pon, Naama Karu, Jiamin Zheng, Carin Li, David Arndt, Maheswor Gautam, Felicity Allen, David S. Wishart

“…This improved version called CFM-ID 3.0 is freely available as a web server. Its source code is also accessible online.…”
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Location of Tandem Repeats on Wheat Chromosome 5B and the Breakpoint on the 5BS Arm in Wheat Translocation T7BS.7BL-5BS Using Single-Copy FISH Analysis by Wei Zhang, Zongxiang Tang, Jie Luo, Guangrong Li, Zujun Yang, Manyu Yang, Ennian Yang, Shulan Fu

“…Alignment using the blastn tool in the B2DSC web server indicated that the genomic sequence of 5B chromosome (IWGSC RefSeq v2.1) does not contain the tandem repeat pTa-275, and the tandem repeat (GA)₂₆ distributed throughout the whole 5B chromosome. …”
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High-fidelity elastic Green’s functions for subduction zone models consistent with the global standard geodetic reference system by Takane Hori, Ryoichiro Agata, Tsuyoshi Ichimura, Kohei Fujita, Takuma Yamaguchi, Takeshi Iinuma

“…Thus, we released a library for the GFs calculated with 1-km grid spacing on the ground surface in this study to the geoscience community on a web server, aiming to contribute more reliable seismic and tsunami hazard assessment.…”
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Pembuatan Sistem Informasi Irigasi dan Kebutuhan Air dengan Standar dan Mekanisme Akses Berbasis Infrastruktur Data Geospasial untuk Irigasi Pertanian di Kabupaten Karanganyar by Dimas Uga Perceka, Trias Aditya

“…Web map dibangun berdasarkan integrasi antara komponen back-end yang terdiri atas PostgreSQL (basisdata), PHP (server-side scripting), Apache (web server) dan komponen front end yang terdiri atas JavaScript, HTML dan CSS. …”
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ITGA3 Is Associated With Immune Cell Infiltration and Serves as a Favorable Prognostic Biomarker for Breast Cancer by Yue Li, Fan Li, Xiaoyu Bai, Yanlei Li, Yanlei Li, Chunsheng Ni, Chunsheng Ni, Xiulan Zhao, Xiulan Zhao, Danfang Zhang, Danfang Zhang

“…LinkedOmics, NetworkAnalyst and Metascape were used to build the signaling network. TIMER is a web server for comprehensive analysis of tumor infiltrating immune cells and tumor infiltrating lymphocytes (TILs).ResultsThe expression of ITGA3 in normal breast tissues was greater than that in breast cancer tissues at both the mRNA and protein levels. …”
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ABP-Finder: A Tool to Identify Antibacterial Peptides and the Gram-Staining Type of Targeted Bacteria by Yasser B. Ruiz-Blanco, Guillermin Agüero-Chapin, Sandra Romero-Molina, Agostinho Antunes, Lia-Raluca Olari, Barbara Spellerberg, Jan Münch, Elsa Sanchez-Garcia

“…Our tool is freely available via a web server named ABP-Finder. This new method ranks within the top state-of-the-art ABP predictors, particularly in terms of precision. …”
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Detecting common coccinellids found in sorghum using deep learning models by Chaoxin Wang, Ivan Grijalva, Doina Caragea, Brian McCornack

“…We used images extracted from the iNaturalist project to perform training and evaluation of the Faster R-CNN-FPN and YOLOv5 and YOLOv7 models. iNaturalist is an imagery web server used to publish citizen’s observations of images pertaining to living organisms. …”
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Beyond radiologist-level liver lesion detection on multi-phase contrast-enhanced CT images by deep learning by Lei Wu, Haishuai Wang, Yining Chen, Xiang Zhang, Tianyun Zhang, Ning Shen, Guangyu Tao, Zhongquan Sun, Yuan Ding, Weilin Wang, Jiajun Bu

“…MULLET has been successfully deployed in real-world settings. The deployed AI web server provides a powerful system to boost clinical workflows of liver lesion diagnosis and could be straightforwardly extended to general CECT analyses.…”
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Prediction of reversible disulfide based on features from local structural signatures by Ming-an Sun, Yejun Wang, Qing Zhang, Yiji Xia, Wei Ge, Dianjing Guo

“…Distinct features remarkably different between these two groups of disulfides were identified, and a SVM-based classifier for predicting reversible disulfides was developed accordingly. A web server named RevssPred can be accessed freely from: http://biocomputer.bio.cuhk.edu.hk/RevssPred .…”
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OGS improvements in the year 2011 in running the Northeastern Italy Seismic Network by P. L. Bragato, D. Pesaresi, A. Saraò, P. Di Bartolomeo, G. Durì

“…In order to improve the seismological monitoring of the Northeastern Italy area, at OGS-CRS we tuned existing programs and created ad hoc ones like: a customized web server named PickServer to manually relocate earthquakes, a script for automatic moment tensor determination, scripts for web publishing of earthquake parametric data, waveforms, state of health parameters and shaking maps, noise characterization by means of automatic spectra analysis, and last but not least scripts for email/SMS/fax alerting. …”
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Specific Inhibition of VanZ-Mediated Resistance to Lipoglycopeptide Antibiotics by Vishma Pratap Sur, Aninda Mazumdar, Vladimir Vimberg, Tommaso Stefani, Ladislav Androvic, Lucie Kracikova, Richard Laga, Zdenek Kamenik, Katerina Komrskova

“…In this study, the three-dimensional structure of VanZ from <i>E. faecium EnGen0191</i> was predicted by using the I-TASSER web server. Based on the VanZ structure, a benzimidazole based ligand was predicted to bind to the VanZ by molecular docking. …”
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Genetic Variant of SARS-CoV-2 Isolates in Indonesia: Spike Glycoprotein Gene by Arif Nur Muhammad Ansori, Viol Dhea Kharisma, Sahal Sabilil Muttaqin, Yulanda Antonius, Arli Aditya Parikesit

“…We analyzed nucleotide variants and amino acid changes using Molecular Evolutionary Genetics Analysis (MEGA) X and analyzed gene similarity using the LALIGN web server. Interestingly, we revealed several specific mutation sites, however, there were no significant changes in the genetic composition of SARS-CoV-2 spike glycoprotein genes, when compared to the WuhanHu-1 isolate from China. …”
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Knockdown of PRL-3 increases mitochondrial superoxide anion production through transcriptional regulation of RAP1 by Yang Y, Lian S, Meng L, Tian Z, Feng Q, Wang Y, Wang P, Qu L, Shou C

“…Gene expression correlation was analyzed through an interactive web server. Statistical analysis was performed with SPSS software.Results: Knockdown of PRL-3 significantly increases mitochondrial superoxide anion, mitochondria membrane potential, and induces cell cycle arrest. …”
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ToPP: Tumor online prognostic analysis platform for prognostic feature selection and clinical patient subgroup selection by Jian Ouyang, Guangrong Qin, Zhenhao Liu, Xingxing Jian, Tieliu Shi, Lu Xie

“…ToPP provides a comprehensive source and easy-to-use interface for tumor prognosis research, with one-stop service of multi-omics, subtyping, and online prognostic modeling. The web server is freely available at http://www.biostatistics.online/topp/index.php.…”
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DATABASE AND BIGDATA PROCESSING SYSTEM FOR ANALYSIS OF AIS MESSAGES IN THE NETBALTIC RESEARCH PROJECT by MICHAŁ LEWCZUK, PAWEŁ CICHOCKI, JÓZEF WOŹNIAK

“…The created tool has a multi-layer architecture that utilizes the MariaDB SQL database, the Apache2 WEB server, and a number of PHP applications. The runtime environment has been built on Linux Debian version 8 and the HP C7000 cluster of the 16 CPU x86 64 architecture. …”
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