Data of whole-genome sequencing of Karakul, Zel, and Kermani sheep breeds by Leila Mohammadipour Saadatabadi, Mohammadreza Mohammadabadi, Zeinab Amiri Ghanatsaman, Olena Babenko, Ruslana Volodymyrivna Stavetska, Oleksandr Mikolayovich Kalashnik, Volodymyr Afanasenko, Oleksandr Anatoliiovych Kochuk-Yashchenko, Dmytro Mykolaiovych Kucher, Hojjat Asadollahpour Nanaei

Subjects: “…Whole-genome sequencing…”
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Whole-genome sequence and analysis of Xanthomonas euvesicatoria strains and reassessment of the species by Jeri D. Barak, Jeri D. Barak, Taca Vancheva, Taca Vancheva, Pierre Lefeuvre, Jeffrey B. Jones, Sujan Timilsina, Gerald V. Minsavage, Gary E. Vallad, Ralf Koebnik

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Assessment of whole-genome sequencing for predicting Mycobacterium tuberculosis drugs resistance by W. Lee, C. Chang, W. Lin, M. Wu, R. Jou

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Vector Quantized Spectral Clustering Applied to Whole Genome Sequences of Plants by Aditya A Shastri, Kapil Ahuja, Milind B Ratnaparkhe, Aditya Shah, Aishwary Gagrani, Anant Lal

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Whole-Genome Sequencing Analysis of Human Metabolome in Multi-Ethnic Populations by Elena V. Feofanova, Michael R. Brown, Taryn Alkis, Astrid M. Manuel, Xihao Li, Usman A. Tahir, Zilin Li, Kevin M. Mendez, Rachel S. Kelly, Qibin Qi, Han Chen, Martin G. Larson, Rozenn N. Lemaitre, Alanna C. Morrison, Charles Grieser, Kari E. Wong, Robert E. Gerszten, Zhongming Zhao, Jessica Lasky-Su, NHLBI Trans-Omics for Precision Medicine (TOPMed), Bing Yu

“…We have performed a whole-genome sequencing association analysis of both common and rare variants in up to 11,840 multi-ethnic participants from five studies with up to 1666 circulating metabolites. …”
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Whole genome sequencing and molecular epidemiology of paediatric Staphylococcus aureus bacteraemia by Anita J. Campbell, Shakeel Mowlaboccus, Geoffrey W. Coombs, Denise A. Daley, Laila S. Al Yazidi, Linny K. Phuong, Clare Leung, Emma J. Best, Rachel H. Webb, Lesley Voss, Eugene Athan, Philip N. Britton, Penelope A. Bryant, Coen T. Butters, Jonathan R. Carapetis, Natasha S. Ching, Joshua Francis, Te-Yu Hung, Clare Nourse, Samar Ojaimi, Alex Tai, Nan Vasilunas, Brendan McMullan, Asha C. Bowen, Christopher C. Blyth

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Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues by Walker, T

“…Whole genome sequencing (WGS) of Mycobacterium tuberculosis has rapidly progressed from a research tool to a clinical application for the diagnosis and management of tuberculosis and in public health surveillance. …”

Improving the diagnostic yield of whole genome sequencing: neurodevelopmental and epilepsy disorders by Hashim, M

“…<p><b>Background:</b> Whole genome sequencing (WGS) has significantly enhanced the diagnostic yield for rare genetic disorders, providing molecular diagnoses and opening avenues for therapeutic interventions, cascade testing, and reproductive planning. …”

Single-molecule DNA-mapping and whole-genome sequencing of individual cells by Marie, R, Pedersen, JN, Bærlocher, L, Koprowska, K, Pødenphant, M, Sabatel, C, Zalkovskij, M, Mironov, A, Bilenberg, B, Ashley, N, Flyvbjerg, H, Bodmer, WF, Kristensen, A, Mir, KU

Identification of Salmonella for public health surveillance using whole genome sequencing by Ashton, P, Nair, S, Peters, T, Bale, J, Powell, D, Painset, A, Tewolde, R, Schaefer, U, Jenkins, C, Dallman, T, De Pinna, E, Grant, K

“… <p style="text-align:justify;"> In April 2015, Public Health England implemented whole genome sequencing (WGS) as a routine typing tool for public health surveillance of Salmonella, adopting a multilocus sequence typing (MLST) approach as a replacement for traditional serotyping. …”

Whole-genome sequencing to determine Neisseria gonorrhoeae transmission: an observational study by De Silva, D, Wilson, D, Crook, D, Peto, T, Waldram, A, Eyre, D, Peters, J, Cole, K, Cole, M, Cresswell, F, Dean, G, Dave, J, Thomas, D, Foster, K, Didelot, X, Grad, Y, Walker, A, Paul, J

Utility of whole-genome sequencing in the clinical diagnostic of rare inherited anaemias by C Camps, NBA Roy, H Dreau, S Henderson, SJL Knight, EM Kvikstad, MM Pentony, M Proven, A Schuh, JC Taylor

Whole genome sequencing for M/XDR tuberculosis surveillance and for resistance testing by Walker, T, Merker, M, Kohl, T, Crook, D, Niemann, S, Peto, T

“…Whole genome sequencing (WGS) can help to relate Mycobacterium tuberculosis genomes to one another to assess genetic relatedness and infer the likelihood of transmission between cases. …”

Diverse sources of C. difficile infection identified on whole-genome sequencing. by Eyre, D, Cule, M, Wilson, D, Griffiths, D, Vaughan, A, O'Connor, L, Ip, C, Golubchik, T, Batty, E, Finney, J, Wyllie, D, Didelot, X, Piazza, P, Bowden, R, Dingle, K, Harding, R, Crook, D, Wilcox, M, Peto, T, Walker, A

“…METHODS: From September 2007 through March 2011, we performed whole-genome sequencing on isolates obtained from all symptomatic patients with C. difficile infection identified in health care settings or in the community in Oxfordshire, United Kingdom. …”

Insights into platypus population structure and history from whole-genome sequencing by Martin, H, Batty, E, Hussin, J, Westall, P, Daish, T, Kolomyjec, S, Piazza, P, Bowden, R, Hawkins, M, Grant, T, Moritz, C, Grutzner, F, Gongora, J, Donnelly, P

“…This study demonstrates the power of whole-genome sequencing for studying natural populations of an evolutionarily important species.…”

Diverse sources of C. difficile infection identified on whole-genome sequencing by Eyre, D, Cule, M, Wilson, D, Griffiths, D, Vaughan, A, O'Connor, L, Ip, C, Golubchik, T, Batty, E, Finney, J, Wyllie, D, Didelot, X, Piazza, P, Bowden, R, Dingle, K, Harding, R, Crook, D, Wilcox, M, Peto, T, Walker, A

“…<br/> <b>METHODS:</b> From September 2007 through March 2011, we performed whole-genome sequencing on isolates obtained from all symptomatic patients with C. difficile infection identified in health care settings or in the community in Oxfordshire, United Kingdom. …”

Clinical and public health utility of Mycobacterium tuberculosis whole genome sequencing by Kizny Gordon, A, Marais, B, Walker, TM, Sintchenko, V

“…The current COVID-19 pandemic further threatens to impact global TB control by diverting resources, reducing notifications and hence significantly increasing deaths attributable to TB (World Health Organization., 2020). <br> Whole genome sequencing (WGS) is becoming increasingly accessible, and has particular value in the diagnosis and management of TB disease (Cabibbe et al., 2018; Meehan et al., 2019). …”

Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae: an observational study by De Silva, D, Peters, J, Cole, K, Cole, M, Cresswell, F, Dean, G, Dave, J, Thomas, D, Foster, K, Waldram, A, Wilson, D, Didelot, X, Grad, Y, Crook, D, Peto, T, Walker, A, Paul, J, Eyre, D

“…New approaches are urgently required to address increasing rates of gonorrhoea and the emergence and global spread of antibiotic-resistant Neisseria gonorrhoeae. We used whole-genome sequencing to study transmission and track resistance in N gonorrhoeae isolates.We did whole-genome sequencing of isolates obtained from samples collected from patients attending sexual health services in Brighton, UK, between Jan 1, 2011, and March 9, 2015. …”

High diversity of clinical Mycobacterium intracellulare in China revealed by whole genome sequencing by Zexuan Song, Zhi Liu, Aijing Ma, Chunfa Liu, Wencong He, Xiangjie Zeng, Yiting Wang, Ping He, Dongxin Liu, Bing Zhao, Hui Xia, Shengfen Wang, Yanlin Zhao

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Whole Genome Sequence Resource of the Asian Pear Scab Pathogen Venturia nashicola by Shakira Johnson, Dan Jones, Amali H. Thrimawithana, Cecilia H. Deng, Joanna K. Bowen, Carl H. Mesarich, Hideo Ishii, Kyungho Won, Vincent G. M. Bus, Kim M. Plummer

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