Whole-genome sequencing revealed genetic diversity and selection of Guangxi indigenous chickens. by Junli Sun, Tao Chen, Min Zhu, Ran Wang, Yingfei Huang, Qiang Wei, Manman Yang, Yuying Liao

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The First Whole Genome Sequence and Characterisation of Avian Nephritis Virus Genotype 3 by Paula Lagan Tregaskis, Ryan Devaney, Victoria J. Smyth

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Bioinformatic Analyses of Whole-Genome Sequence Data in a Public Health Laboratory by Kelly F. Oakeson, Jennifer Marie Wagner, Michelle Mendenhall, Andreas Rohrwasser, Robyn Atkinson-Dunn

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Multidrug-resistant tuberculosis in Finland: treatment outcome and the role of whole-genome sequencing by Virve Korhonen, Pia Kivelä, Marjo Haanperä, Hanna Soini, Tuula Vasankari

“…We assessed treatment combinations, outcome and the utility of whole-genome sequencing (WGS) in MDR-TB cases. Clinical, demographic and microbiological data were obtained of all patients with MDR-TB who started treatment in Finland in 2007–2016. …”
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Whole genome sequencing resolves 10 years diagnostic odyssey in familiar myxoma by Sára Pálla, Judit Tőke, Anikó Bozsik, Henriett Butz, János Papp, István Likó, Enikő Kuroli, András Bánvölgyi, Mátyás Hamar, Jerome Bertherat, Márta Medvecz, Attila Patócs

“…Targeted testing of PRKAR1A gene, whole exome and whole genome sequencing (WGS) were performed in the proband, one clinically affected and one unaffected relative. …”
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Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae by Javier F. Tabima, Brent A. Kronmiller, Caroline M. Press, Brett M. Tyler, Inga A. Zasada, Niklaus J. Grünwald

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High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. by Anjana Srivatsan, Yi Han, Jianlan Peng, Ashley K Tehranchi, Richard Gibbs, Jue D Wang, Rui Chen

“…Whole-genome sequencing is a powerful technique for obtaining the reference sequence information of multiple organisms. …”
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Tracking human population structure through time from whole genome sequences. by Ke Wang, Iain Mathieson, Jared O'Connell, Stephan Schiffels

“…We apply MSMC-IM to whole genome sequences from 15 worldwide populations, tracking the process of human genetic diversification. …”
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Coverage bias and sensitivity of variant calling for four whole-genome sequencing technologies. by Nora Rieber, Marc Zapatka, Bärbel Lasitschka, David Jones, Paul Northcott, Barbara Hutter, Natalie Jäger, Marcel Kool, Michael Taylor, Peter Lichter, Stefan Pfister, Stephan Wolf, Benedikt Brors, Roland Eils

“…Currently, there are four commonly used whole-genome sequencing platforms on the market: Illumina's HiSeq2000, Life Technologies' SOLiD 4 and its completely redesigned 5500xl SOLiD, and Complete Genomics' technology. …”
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Whole genome sequencing and protein structure analyses of target genes for the detection of Salmonella by Lijun Hu, Guojie Cao, Eric W. Brown, Marc W. Allard, Li M. Ma, Guodong Zhang

“…To this end, we performed whole genome sequencing of 143 isolates of Salmonella serotypes (Enteritidis, Typhimurium, and Heidelberg) obtained from poultry (eggs and chicken). …”
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Analysis of bovine tuberculosis transmission in Jalisco, Mexico through whole-genome sequencing by Escárcega Dulce Anahy Verdugo, Razo Claudia Angélica Perea, Ruíz Sara González, Gallegos Susana Lucia Sosa, Suazo Feliciano Milián, Alarcón Germinal Jorge Cantó

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Strategies for Obtaining and Pruning Imputed Whole-Genome Sequence Data for Genomic Prediction by Shaopan Ye, Ning Gao, Rongrong Zheng, Zitao Chen, Jinyan Teng, Xiaolong Yuan, Hao Zhang, Zanmou Chen, Xiquan Zhang, Jiaqi Li, Zhe Zhang

“…Genomic prediction with imputed whole-genome sequencing (WGS) data is an attractive approach to improve predictive ability with low cost. …”
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Retrospective Genotyping and Whole Genome Sequencing of a Canine Parvovirus Outbreak in Bangladesh by Tofazzal Md Rakib, Babu Kanti Nath, Tridip Das, Saroj Kumar Yadav, Shane R. Raidal, Shubhagata Das

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Improved Whole-Genome Sequence of Phytophthora capsici Generated by Long-Read Sequencing by Jinxia Shi, Wenwu Ye, Dongfang Ma, Junliang Yin, Zhichao Zhang, Yuanchao Wang, Yongli Qiao

“…The N50 scaffold length and maximum scaffold length are 1.0 and 4.1 Mb, respectively. The whole-genome sequence of P. capsici will broaden our knowledge of this pathogen and enhance our understanding of the molecular basis of its pathogenicity, which will facilitate the development of effective management strategies.…”
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Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing by Amogelang R. Raphenya, James Robertson, Casper Jamin, Leonardo de Oliveira Martins, Finlay Maguire, Andrew G. McArthur, John P. Hays

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Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in <it>Saccharomyces cerevisiae</it> by Wijeratne Asela J, Qi Ji, Tomsho Lynn P, Hu Yi, Schuster Stephan C, Ma Hong

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Antimicrobial resistance surveillance with whole genome sequencing in Africa: It’s (about) time by Hajo Grundmann, Hellen Gelband

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Whole-genome sequencing analysis of Y chromosome microdeletion: a case report by Zhixiang Gao, Feng Yuan, Qiaoqiao Li, Renlan Xia, Kai Fu, Boxin Xue, Xiaolong Liu

“…Here, we used whole-genome sequencing to explore the mechanism of Y chromosome deletion and potential therapeutic targets in a patient with infertility. …”
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Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data by Benjamin Sobkowiak, Judith R. Glynn, Rein M. G. J. Houben, Kim Mallard, Jody E. Phelan, José Afonso Guerra-Assunção, Louis Banda, Themba Mzembe, Miguel Viveiros, Ruth McNerney, Julian Parkhill, Amelia C. Crampin, Taane G. Clark

“…Conclusions Mixed Mycobacterium tuberculosis infection was identified in silico using whole genome sequence data. The methods presented here can be applied to population-wide analyses of tuberculosis to estimate the frequency of mixed infection, and to identify individual cases of mixed infections. …”
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Whole genome sequencing data of Streptococcus pneumoniae isolated from Indonesian population by Miftahuddin Majid Khoeri, Yustinus Maladan, Korrie Salsabila, Lindawati Alimsardjono, Naritha Vermasari, Iva Puspitasari, Rina Yunita, Wisnu Tafroji, Rosantia Sarassari, Ratna Fathma Sari, Sarah Azhari Balqis, Ghina Athyah Wahid, Diana Shinta Purwanto, Kuntjoro Harimurti, Amin Soebandrio, Dodi Safari

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