Molecular Characterisation of <i>M. kansasii</i> Isolates by Whole-Genome Sequencing by Priya Rajendran, Chandrasekaran Padmapriyadarsini, Naveenkumar Nagarajan, Roja Samyuktha, Vadivu Govindaraju, Radhika Golla, Shanmugavel Ashokkumar, Sivakumar Shanmugam

Subjects: Get full text

Whole Genome Sequencing for Studying <i>Helicobacter pylori</i> Antimicrobial Resistance by Belén Fernández-Caso, Ana Miqueleiz, Teresa Alarcón

Subjects: Get full text

Analysis of whole genome sequence of strain "0" of avian infectious laryngotracheitis virus by A. A. Kozlov, N. G. Zinyakov, S. N. Kolosov, N. S. Mudrak, I. A. Chvala

Subjects: Get full text

Whole Genome Sequence of an Edible Mushroom <i>Stropharia rugosoannulata</i> (Daqiugaigu) by Shuwen Li, Shuxue Zhao, Chunhui Hu, Chengzhi Mao, Lizhong Guo, Hailong Yu, Hao Yu

Get full text

Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform by Shepherd Lara D, McComish Bennet J, Atherton Robin A, Berry Lorraine A, Albert Nick W, Lockhart Peter J

“…</p> <p>Conclusions</p> <p>We report successful whole genome sequencing of chloroplast DNA from karaka, obtained efficiently and with high fidelity.…”
Get full text

Clinical application of tumour-in-normal contamination assessment from whole genome sequencing by Jonathan Mitchell, Salvatore Milite, Jack Bartram, Susan Walker, Nadezda Volkova, Olena Yavorska, Magdalena Zarowiecki, Jane Chalker, Rebecca Thomas, Luca Vago, Alona Sosinsky, Giulio Caravagna

“…Abstract The unexpected contamination of normal samples with tumour cells reduces variant detection sensitivity, compromising downstream analyses in canonical tumour-normal analyses. Leveraging whole-genome sequencing data available at Genomics England, we develop a tool for normal sample contamination assessment, which we validate in silico and against minimal residual disease testing. …”
Get full text

Whole genome sequence analysis of blood lipid levels in >66,000 individuals by Margaret Sunitha Selvaraj, Xihao Li, Zilin Li, Akhil Pampana, David Y. Zhang, Joseph Park, Stella Aslibekyan, Joshua C. Bis, Jennifer A. Brody, Brian E. Cade, Lee-Ming Chuang, Ren-Hua Chung, Joanne E. Curran, Lisa de las Fuentes, Paul S. de Vries, Ravindranath Duggirala, Barry I. Freedman, Mariaelisa Graff, Xiuqing Guo, Nancy Heard-Costa, Bertha Hidalgo, Chii-Min Hwu, Marguerite R. Irvin, Tanika N. Kelly, Brian G. Kral, Leslie Lange, Xiaohui Li, Martin Lisa, Steven A. Lubitz, Ani W. Manichaikul, Preuss Michael, May E. Montasser, Alanna C. Morrison, Take Naseri, Jeffrey R. O’Connell, Nicholette D. Palmer, Patricia A. Peyser, Muagututia S. Reupena, Jennifer A. Smith, Xiao Sun, Kent D. Taylor, Russell P. Tracy, Michael Y. Tsai, Zhe Wang, Yuxuan Wang, Wei Bao, John T. Wilkins, Lisa R. Yanek, Wei Zhao, Donna K. Arnett, John Blangero, Eric Boerwinkle, Donald W. Bowden, Yii-Der Ida Chen, Adolfo Correa, L. Adrienne Cupples, Susan K. Dutcher, Patrick T. Ellinor, Myriam Fornage, Stacey Gabriel, Soren Germer, Richard Gibbs, Jiang He, Robert C. Kaplan, Sharon L. R. Kardia, Ryan Kim, Charles Kooperberg, Ruth J. F. Loos, Karine A Viaud-Martinez, Rasika A. Mathias, Stephen T. McGarvey, Braxton D. Mitchell, Deborah Nickerson, Kari E. North, Bruce M. Psaty, Susan Redline, Alexander P. Reiner, Ramachandran S. Vasan, Stephen S. Rich, Cristen Willer, Jerome I. Rotter, Daniel J. Rader, Xihong Lin, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Gina M. Peloso, Pradeep Natarajan

“…Here, the authors perform a rare coding and noncoding variant association study of blood lipid levels using whole genome sequencing data.…”
Get full text

Whole-Genome Sequencing in Diagnostics of Selected Slovenian Undiagnosed Patients with Rare Disorders by Gaber Bergant, Aleš Maver, Borut Peterlin

Subjects: “…whole-genome sequencing…”
Get full text

Detection of identity by descent using next-generation whole genome sequencing data by Su Shu-Yi, Kasberger Jay, Baranzini Sergio, Byerley William, Liao Wilson, Oksenberg Jorge, Sherr Elliott, Jorgenson Eric

Get full text

Whole genome sequencing data of Vigna nakashimae var. Ukushima and G418 by Eri Ogiso-Tanaka, Sompong Chankaew, Takehisa Isemura, Alisa Kongjaimun, Akiko Baba, Ken Naito, Akito Kaga, Norihiko Tomooka

“…Keywords: Vigna nakashimae, Closely wild relatives of Adzuki bean, Next-generation sequencing, HiSeq, Whole genome sequencing…”
Get full text

Genetic determinants of Biofilm formation of Helicobacter pylori using whole-genome sequencing by Kartika Afrida Fauzia, Hafeza Aftab, Muhammad Miftahussurur, Langgeng Agung Waskito, Vo Phuoc Tuan, Ricky Indra Alfaray, Takashi Matsumoto, Michiyuki Yurugi, Phawinee Subsomwong, Evariste Tshibangu Kabamba, Junko Akada, Yoshio Yamaoka

Subjects: “…Whole-genome sequences…”
Get full text

African swine fever whole-genome sequencing-Quantity wanted but quality needed. by Jan H Forth, Leonie F Forth, Sandra Blome, Dirk Höper, Martin Beer

“…Since the circulating strains are almost identical, time and money have been mis-invested in whole-genome sequencing the last years. New methods, harmonised protocols for sample selection, sequencing, and bioinformatics are therefore urgently needed.…”
Get full text

Whole-genome sequencing reveals the genetic mechanisms of domestication in classical inbred mice by Ming Liu, Caixia Yu, Zhichao Zhang, Mingjing Song, Xiuping Sun, Jaroslav Piálek, Jens Jacob, Jiqi Lu, Lin Cong, Hongmao Zhang, Yong Wang, Guoliang Li, Zhiyong Feng, Zhenglin Du, Meng Wang, Xinru Wan, Dawei Wang, Yan-Ling Wang, Hongjun Li, Zuoxin Wang, Bing Zhang, Zhibin Zhang

Get full text

Canine Parvovirus in Turkey: First Whole-Genome Sequences, Strain Distribution, and Prevalence by Mehmet Cevat Temizkan, Secil Sevinc Temizkan

“…These samples and all sequences previously studied for CPV in Turkey were analyzed for whole-genome sequences, nationwide strain distribution over the two years, and the central Turkey prevalence rate. …”
Get full text

Corrigendum: Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases by Peter Gerner-Smidt, John Besser, Jeniffer Concepción-Acevedo, Jason P. Folster, Jasmine Huffman, Lavin A. Joseph, Zuzana Kucerova, Megin C. Nichols, Colin A. Schwensohn, Beth Tolar

Subjects: “…whole genome sequencing (WGS)…”
Get full text

Evaluation of resistance acquisition during tuberculosis treatment using whole genome sequencing by Cinara Silva Feliciano, Jessica Rodrigues Plaça, Kamila Peronni, Wilson Araújo Silva, Jr, Valdes Roberto Bollela

“…Keywords: Tuberculosis, Drug resistant tuberculosis, Drug susceptibility tests, Whole genome sequencing…”
Get full text

Unravelling the genetic architecture of human complex traits through whole genome sequencing by Ozvan Bocher, Cristen J. Willer, Eleftheria Zeggini

“…Whole genome sequencing has enabled new insights into the genetic architecture of complex traits, especially through access to low-frequency and rare variation. …”
Get full text

Identifying genetic determinants of complex phenotypes from whole genome sequence data by George S. Long, Mohammed Hussen, Jonathan Dench, Stéphane Aris-Brosou

Get full text

Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. by Claudio U Köser, Matthew J Ellington, Edward J P Cartwright, Stephen H Gillespie, Nicholas M Brown, Mark Farrington, Matthew T G Holden, Gordon Dougan, Stephen D Bentley, Julian Parkhill, Sharon J Peacock

Get full text

Whole genome sequencing of the fast-swimming Southern bluefin tuna (Thunnus maccoyii) by Xiaomeng Zhao, Xiaomeng Zhao, Yu Huang, Chao Bian, Xinxin You, Xinxin You, Xinhui Zhang, Xinhui Zhang, Xinhui Zhang, Jieming Chen, Min Wang, Cancan Hu, Yun Xu, Yun Xu, Yun Xu, Junmin Xu, Junmin Xu, Junmin Xu, Qiong Shi, Qiong Shi, Qiong Shi

“…Here, we performed whole genome sequencing and assembled a draft genome for Southern bluefin tuna, aiming to generate useful genetic data for comparative functional prediction. …”
Get full text