Whole genome sequencing in the study of disease and application in personalised medicine by Kumarasuriyar A

Get full text

Identifying and mitigating batch effects in whole genome sequencing data by Jennifer A. Tom, Jens Reeder, William F. Forrest, Robert R. Graham, Julie Hunkapiller, Timothy W. Behrens, Tushar R. Bhangale

Subjects: “…Whole genome sequencing…”
Get full text

Whole-genome sequencing of Histophilus somni strains isolated in Russia by Svetlana Yatsentyuk, Julia Pobolelova, Veronika Gordeeva, Irina Timofeeva

“…DNA extraction was performed using QIAamp DNA Mini Kit (QIAGEN, USA). The whole-genome sequencing of the four strains was performed using Illumina Miseq. …”
Get full text

Whole-Genome Sequencing Analysis of Sapovirus Detected in South Korea. by Hye Lim Choi, Chang-Il Suh, Seung-Won Park, Ji-Young Jin, Han-Gil Cho, Soon-Young Paik

“…Recently, SaV infection has been on the rise throughout the world, particularly in countries neighboring South Korea; however, very few academic studies have been done nationally. As the first whole-genome sequence analysis of SaV in South Korea, this research will help provide reference for the detection of recombination, tracking of epidemic spread, and development of diagnosis methods for SaV.…”
Get full text

Blood group typing from whole-genome sequencing data. by Julien Paganini, Peter L Nagy, Nicholas Rouse, Philippe Gouret, Jacques Chiaroni, Chistophe Picard, Julie Di Cristofaro

“…Whole-genome sequencing data were also explored for other alleles. …”
Get full text

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing by Nelson Rex T, Roe Bruce A, O'Bleness Majesta, Yi Jing, Deshpande Shweta, Vasylenko-Sanders Iryna F, Schlueter Shannon D, Lin Jer-Young, Schlueter Jessica A, Scheffler Brian E, Jackson Scott A, Shoemaker Randy C

Get full text

Whole genome sequencing of Mycoplasma hominis strains resistant to ciprofloxacin by Kolesnikova E.A., Brusnigina N.F., Makhova M.A., Alekseeva A.E.

Subjects: Get full text

Long‐read whole‐genome sequencing for the genetic diagnosis of dystrophinopathies by Zhiying Xie, Chengyue Sun, Siwen Zhang, Yilin Liu, Meng Yu, Yiming Zheng, Lingchao Meng, Anushree Acharya, Diana M Cornejo‐Sanchez, Gao Wang, Wei Zhang, Isabelle Schrauwen, Suzanne M. Leal, Zhaoxia Wang, Yun Yuan

“…Our study shows that long‐read whole‐genome sequencing can serve as a clinical diagnostic tool for genetically unsolved dystrophinopathies.…”
Get full text

Investigation of in-hospital norovirus transmission using whole genome sequencing by Wong, THN

“…</p> <p>The study explored the application of 'next generation' high throughput DNA sequencing technologies to the determination of large numbers of norovirus genomes. Whole genome sequences provide the highest possible level of discrimination among viruses, information which is essential to the identification of linked and independent cases of infection. …”

The usefulness of whole genome sequencing in the management of Staphylococcus aureus infections. by Price, J, Gordon, N, Crook, D, Llewelyn, M, Paul, J

“…The burden of disease is exacerbated by the emergence of virulent strains with reduced susceptibility to commonly used antibiotics and their dissemination in healthcare settings and in the community. Whole genome sequencing (WGS) has the potential to revolutionize our understanding and management of S. aureus infection. …”

Whole-genome sequencing of a sporadic primary immunodeficiency cohort by Thaventhiran, JED, Lango Allen, H, Burren, OS, Rae, W, Greene, D, Staples, E, Zhang, Z, Farmery, JHR, Simeoni, I, Rivers, E, Maimaris, J, Penkett, CJ, Stephens, J, Deevi, SVV, Sanchis-Juan, A, Gleadall, NS, Thomas, MJ, Sargur, RB, Gordins, P, Baxendale, HE, Brown, M, Tuijnenburg, P, Worth, A, Hanson, S, Linger, RJ, Buckland, MS, Rayner-Matthews, PJ, Gilmour, KC, Samarghitean, C, Seneviratne, SL, Sansom, DM, Lynch, AG, Megy, K, Ellinghaus, E, Ellinghaus, D, Jorgensen, SF, Karlsen, TH, Stirrups, KE, Cutler, AJ, Kumararatne, DS, Chandra, A, Edgar, JDM, Herwadkar, A, Cooper, N, Grigoriadou, S, Huissoon, AP, Goddard, S, Jolles, S, Schuetz, C, Boschann, F, Roberts, IAG

“…Here we address these challenges by performing whole-genome sequencing in a large PID cohort of 1,318 participants. …”

Inference of homologous recombination in bacteria using whole-genome sequences. by Didelot, X, Lawson, D, Darling, A, Falush, D

Evolutionary history of Tibetans inferred from whole-genome sequencing. by Hu, H, Petousi, N, Glusman, G, Yu, Y, Bohlender, R, Tashi, T, Downie, J, Roach, J, Cole, A, Lorenzo, F, Rogers, A, Brunkow, M, Cavalleri, G, Hood, L, Alpatty, S, Prchal, J, Jorde, L, Robbins, P, Simonson, T, Huff, C

Whole-genome sequencing for predicting clarithromycin resistance in Mycobacterium abscessus by Lipworth, S, Hough, N, Leach, L, Morgan, M, Jeffery, K, Andersson, M, Robinson, E, Smith, EG, Crook, D, Peto, T, Walker, T

“…The recent introduction of routine whole-genome sequencing (WGS) as a replacement for existing reference techniques in England provides an opportunity to characterize the genetic determinants of resistance. …”

Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing by Gordon, N, Price, JR, Cole, K, Everitt, R, Morgan, M, Finney, J, Kearns, A, Pichon, B, Young, B, Wilson, D, Llewelyn, M, Paul, J, Peto, T, Crook, D, Walker, A, Golubchik, T

“…Whole-genome sequencing (WGS) could potentially provide a single platform for extracting all the information required to predict an organism's phenotype. …”

Whole genome sequencing in the prevention and control of Staphylococcus aureus infection. by Price, JR, Didelot, X, Crook, D, Llewelyn, M, Paul, J

“…AIM: To outline the practicalities of whole genome sequencing and discuss how it might shape future infection control practice. …”

Germline whole genome sequencing in pediatric oncology in Denmark—Practitioner perspectives by Anna Byrjalsen, Ulrik K. Stoltze, Anders Castor, Ayo Wahlberg

Subjects: Get full text

Whole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans by Yisong Liu, Qi Tang, Pi Cheng, Mingfei Zhu, Hui Zhang, Jiazhe Liu, Mengting Zuo, Chongyin Huang, Changqiao Wu, Zhiliang Sun, Zhaoying Liu

Get full text

Whole genome sequencing reveals signals of adaptive admixture in Creole cattle by Slim Ben-Jemaa, Gabriele Adam, Mekki Boussaha, Philippe Bardou, Christophe Klopp, Nathalie Mandonnet, Michel Naves

Get full text

Whole genome sequencing for metastatic mutational burden in extraskeletal myxoid chondrosarcoma by Trudy Zou, Rahil Sethi, Jiefei Wang, Gungor Budak, Uma Chandran, Ivy John, Rebecca Watters, Kurt Weiss

Subjects: Get full text