Whole Genome Sequencing: An Efficient Approach in Food Safety Management System by Hedayat Hossieni

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Whole genome sequencing reveals hidden transmission of carbapenemase-producing Enterobacterales by Kalisvar Marimuthu, Indumathi Venkatachalam, Vanessa Koh, Stephan Harbarth, Eli Perencevich, Benjamin Pei Zhi Cherng, Raymond Kok Choon Fong, Surinder Kaur Pada, Say Tat Ooi, Nares Smitasin, Koh Cheng Thoon, Paul Anantharajah Tambyah, Li Yang Hsu, Tse Hsien Koh, Partha Pratim De, Thean Yen Tan, Douglas Chan, Rama Narayana Deepak, Nancy Wen Sim Tee, Andrea Kwa, Yiying Cai, Yik-Ying Teo, Natascha May Thevasagayam, Sai Rama Sridatta Prakki, Weizhen Xu, Wei Xin Khong, David Henderson, Nicole Stoesser, David W. Eyre, Derrick Crook, Michelle Ang, Raymond Tzer Pin Lin, Angela Chow, Alex R. Cook, Jeanette Teo, Oon Tek Ng, Carbapenemase-Producing Enterobacteriaceae in Singapore (CaPES) Study Group

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Whole genome sequencing and rare variant analysis in essential tremor families. by Zagaa Odgerel, Shilpa Sonti, Nora Hernandez, Jemin Park, Ruth Ottman, Elan D Louis, Lorraine N Clark

“…The etiology of ET remains largely unexplained. Whole genome sequencing (WGS) is likely to be of value in understanding a large proportion of ET with Mendelian and complex disease inheritance patterns. …”
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Whole genome sequencing and prediction of antimicrobial susceptibilities in non-tuberculous mycobacteria by Priya Solanki, Marc Lipman, Marc Lipman, Timothy D. McHugh, Giovanni Satta

“…To benefit from the advantages of whole genome sequencing, further advances in resistance prediction need to take place, as well as there being better information on novel drug mutations and an understanding of the impact of whole genome sequencing on NTM treatment outcomes.…”
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The "most wanted" taxa from the human microbiome for whole genome sequencing. by Anthony A Fodor, Todd Z DeSantis, Kristine M Wylie, Jonathan H Badger, Yuzhen Ye, Theresa Hepburn, Ping Hu, Erica Sodergren, Konstantinos Liolios, Heather Huot-Creasy, Bruce W Birren, Ashlee M Earl

“…Taken together, these results suggest that it should be possible to perform whole-genome sequencing on a large fraction of the human microbiome, including the 'most wanted', and that these sequences should serve to support microbiome studies across multiple cohorts. …”
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Clinical and public health utility of Mycobacterium tuberculosis whole genome sequencing by Alice Kizny Gordon, Ben Marais, Timothy M. Walker, Vitali Sintchenko

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Comparison of structural variant callers for massive whole-genome sequence data by Soobok Joe, Jong-Lyul Park, Jun Kim, Sangok Kim, Ji-Hwan Park, Min-Kyung Yeo, Dongyoon Lee, Jin Ok Yang, Seon-Young Kim

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Identification of genomic variations of Azeri buffaloes using whole genome sequencing by Milad Hosseini, Hossein Moradi shahrbabak, Mohamad Moradi shahrbabak

“…Also, introducing the effects of these variations on different genomic regions of Azeri buffaloes have potential applications in breeding programs.Materials and MethodsIn this study, whole genome sequencing of 5 heads of Azeri buffaloes native to Iran was done by Illumina sequencing platform. …”
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Use of Whole Genome Sequencing for Diagnosis and Discovery in the Cancer Genetics Clinic by Samantha B. Foley, Jonathan J. Rios, Victoria E. Mgbemena, Linda S. Robinson, Heather L. Hampel, Amanda E. Toland, Leslie Durham, Theodora S. Ross

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Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis by Meng-Ying Lin, Nils Koppers, Alisandra Denton, Urte Schlüter, Andreas P.M. Weber

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Homozygous duplication identified by whole genome sequencing causes LRBA deficiency by Daniele Merico, Yehonatan Pasternak, Mehdi Zarrei, Edward J. Higginbotham, Bhooma Thiruvahindrapuram, Ori Scott, Jessica Willett-Pachul, Eyal Grunebaum, Julia Upton, Adelle Atkinson, Vy H. D. Kim, Elbay Aliyev, Khalid Fakhro, Stephen W. Scherer, Chaim M. Roifman

“…Abstract In more than one-third of primary immunodeficiency (PID) patients, extensive genetic analysis including whole-exome sequencing (WES) fails to identify the genetic defect. Whole-genome sequencing (WGS) is able to detect variants missed by other genomics platforms, enabling the molecular diagnosis of otherwise unresolved cases. …”
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Investigation of a Lomentospora prolificans case cluster with whole genome sequencing by Peter Boan, Stanley Pang, Dianne J. Gardam, Helen Darragh, Matthew Wright, Geoffrey W. Coombs

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Whole Genome Sequencing-Based Comparison of Food Isolates of Cronobacter sakazakii by Mohamed A. Aly, Mohamed A. Aly, Konrad J. Domig, Wolfgang Kneifel, Erik Reimhult

“…In this context, we present the whole genome sequence (WGS) of two different C. sakazakii isolated from skimmed milk powder (C7) and ready-to-eat salad mix (C8), respectively. …”
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Public attitudes in Japan toward participation in whole genome sequencing studies by Taketoshi Okita, Noriko Ohashi, Daijiro Kabata, Ayumi Shintani, Kazuto Kato

Subjects: “…Whole genome sequencing studies…”
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Mapping the serum proteome to neurological diseases using whole genome sequencing by Grace Png, Andrei Barysenka, Linda Repetto, Pau Navarro, Xia Shen, Maik Pietzner, Eleanor Wheeler, Nicholas J. Wareham, Claudia Langenberg, Emmanouil Tsafantakis, Maria Karaleftheri, George Dedoussis, Anders Mälarstig, James F. Wilson, Arthur Gilly, Eleftheria Zeggini

“…Here, the authors use whole genome sequencing data to describe the genetic architecture of neurologically-relevant serum proteins and establish causal protein-neurological disease relationships.…”
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Whole Genome Sequencing and Biological Characterization of Bacillus cereus GW-01 by Shan LIU, Yangdan JIANG, Jisha YAN, Yuxuan XIE, Sijia ZHAO, Qitian HE, Jiayuan ZHAO

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Whole genome sequencing in ROHHAD trios proved inconclusive: what’s beyond? by A. Grossi, M. Rusmini, M. Rusmini, R. Cusano, M. Massidda, G. Santamaria, F. Napoli, A. Angelelli, D. Fava, P. Uva, I. Ceccherini, M. Maghnie, M. Maghnie

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Using whole genome sequencing to study American foulbrood epidemiology in honeybees. by Joakim Ågren, Marc Oliver Schäfer, Eva Forsgren

“…However, a more powerful alternative is multi-locus sequence typing (MLST) using whole-genome sequencing (WGS), which allows for high-resolution studies of disease outbreaks. …”
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New Horizons in the Diagnosis of Tuberculosis of the Spine: The Role of Whole Genome Sequencing by Mthunzi Ngcelwane, Shaheed Vally Omar, Mohamed Said, Meshack Bida

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Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing by Hatice Gulcin Ozer, Aisulu Usubalieva, Adrienne Dorrance, Ayse Selen Yilmaz, Michael Caligiuri, Guido Marcucci, Kun Huang

“…The genome-wide discoveries such as detection of copy number alterations (CNA) from high-throughput whole-genome sequencing data enabled new developments in personalized medicine. …”
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